1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
...atttgcctagggtgaagtgcattttagcctatagttgagatgtcaataatgttgtacgattgtgcaatgcggtgtaacggaaccttttggtaatctgtagCAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTAGTGTTGTTCCTCGAAGGACGCAGATAATATGCCCGCAGCTTCAAGTTCT
species | Physcomitrella patens |
transcript | PP1S90_220V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGG CAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTAEST: gi|162186918|gb|FC362596.1|FC362596
genomic: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGGgtatgtgtac ... taatctgtagCAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTA
EST: CGGACCGATTCCCTGTATCTGG CAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTAEST: gi|18327758|gb|BJ159761.1|BJ159761
genomic: CGGACCGATTCCCTGTATCTGGgtatgtgtac ... taatctgtagCAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTA
EST: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGG CAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTAEST: gi|67575766|gb|BJ948590.1|BJ948590
genomic: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGGgtatgtgtac ... taatctgtagCAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTA
EST: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGG CAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTAEST: gi|67717954|gb|BJ968213.1|BJ968213
genomic: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGGgtatgtgtac ... taatctgtagCAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTA
EST: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGG CAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTAEST: gi|162193418|gb|FC368917.1|FC368917
genomic: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGGgtatgtgtac ... taatctgtagCAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTA
EST: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGG CAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTA
genomic: GATGGTATCCTCGTGTCGTCTGTGTCTTCGGACCGATTCCCTGTATCTGGgtatgtgtac ... taatctgtagCAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTA
ataatgttgtacgattgtgcaatgcggtgtaacggaaccttttggtaatctgtagCAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTAGTGTTGTTCCTCGAAGGACGCAGATAATATGCCCGCAGCTTCAAGTTCT
gtgtaac putative branch site (score: 5)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgcctagggtgaagtgcattttagcctatagttgagatgtcaataatgttgtacgattgtgcaatgcggtgtaacggaaccttttggtaatctgtagCAATTGAGCAATCCGCAGCTCAAGCGAACTCGCTGCCCAGAAGCAGCTGTAGTGTTGTTCCTCGAAGGACGCAGATAATATGCCCGCAGCTTCAAGTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT