1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...gtgtagcgaaaggatttttagcgctcgtaattgtgacgtgggattgcgatcgagccttggatgctatgccaattaggttcctctgttgggtttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGCAAAGAAGGGGGAGTGCGGGCAAGGCTTCAGTTCAAGCAACGCTTACCG
species | Physcomitrella patens |
transcript | PP1S90_13V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAG AATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGEST: gi|208352454|gb|DC910182.1|DC910182
genomic: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAGgtattgattt ... tttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTG
EST: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAG AATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGEST: gi|100379542|gb|BY949821.1|BY949821
genomic: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAGgtattgattt ... tttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTG
EST: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAG AATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGEST: gi|100427225|gb|BY959038.1|BY959038
genomic: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAGgtattgattt ... tttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTG
EST: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAG AATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGEST: gi|100440297|gb|BY962162.1|BY962162
genomic: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAGgtattgattt ... tttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTG
EST: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAG AATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGEST: gi|208388191|gb|DC933227.1|DC933227
genomic: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAGgtattgattt ... tttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTG
EST: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAG AATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGEST: gi|100377995|gb|BY949627.1|BY949627
genomic: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAGgtattgattt ... tttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTG
EST: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAG AATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGEST: gi|100370769|gb|BY948507.1|BY948507
genomic: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAGgtattgattt ... tttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTG
EST: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAG AATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTG
genomic: ACCACTGCGGAGTCGCCTCGTTCGGGGCCCAGCTCAGGACTCGTTTCGAGgtattgattt ... tttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTG
gcgatcgagccttggatgctatgccaattaggttcctctgttgggtttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGCAAAGAAGGGGGAGTGCGGGCAAGGCTTCAGTTCAAGCAACGCTTACCG
aatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtagcgaaaggatttttagcgctcgtaattgtgacgtgggattgcgatcgagccttggatgctatgccaattaggttcctctgttgggtttgttgcagAATGAGTTTCTGGGCTGCTCCTGGTCACACCGAGCGGCGAATGGCTCTGTGCAAAGAAGGGGGAGTGCGGGCAAGGCTTCAGTTCAAGCAACGCTTACCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA