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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaccgtggctttgaagagcctactatgcaacttattgcataatatgtaccatgctgggcaactcgaaggattggactaaattgggatgtttgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTGTGGCAGTAATGGCCACCAAGACTAGCATTGCGCATATTTTAGGGGAGAC

Basic information

species Physcomitrella patens
transcript PP1S90_133V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67508255|gb|BJ941124.1|BJ941124
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|162184090|gb|FC358836.1|FC358836
EST:     GCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: GCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|67576060|gb|BJ948884.1|BJ948884
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|100385472|gb|BY969809.1|BY969809
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|67573146|gb|BJ945970.1|BJ945970
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|100438252|gb|BY979863.1|BY979863
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|100450655|gb|CJ974372.1|CJ974372
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAANAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|208358499|gb|DC930631.1|DC930631
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
EST: gi|67578091|gb|BJ950258.1|BJ950258
EST:     TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAG                         GGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG
genomic: TGCACTTGCTTGAGCCTTGGATTACACTAGATTTATTTGCAGAGAAGAAGgtgggttttt ... tgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtaccatgctgggcaactcgaaggattggactaaattgggatgtttgctttgaagGGTCTCGATACAGGGCAGCGTAGACCAGGAGGAGAGTAGAGACCTAAGTTGTGGCAGTAATGGCCACCAAGACTAGCATTGCGCATATTTTAGGGGAGAC
                            gactaaa  putative branch site (score: 2)
                                           tttgcttt  putative PPT
                             actaaatt  TA-rich tract