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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttccggatcatgagacagcacgatcgtctcacggttgagcctggacgacttgtgcatttcataaagattggagaattaagacatgttcattgtgatgcagTATCGAAGATGTCATTGGTCGGTTCGCCAACTTGCCAATGCATGAGCGGAACAAAAG

Basic information

species Physcomitrella patens
transcript PP1S8_95V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22773462|gb|AJ487541.1|AJ487541
EST:     TTGATCATGTTCTCACCTTCAGGCAAACTCACTCAGTACAGTAATTGCAG                         TATCGAAGATGTCATTGGTCGGTTCGCCAACTTGCCAATGCATGAGCGGAA
genomic: TTGATCATGTTCTCACCTTCAGGCAAACTCACTCAGTACAGTAATTGCAGgttcgaatct ... tgtgatgcagTATCGAAGATGTCATTGGTCGGTTCGCCAACTTGCCAATGCATGAGCGGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgacttgtgcatttcataaagattggagaattaagacatgttcattgtgatgcagTATCGAAGATGTCATTGGTCGGTTCGCCAACTTGCCAATGCATGAGCGGAACAAAAG
          atttcataaagatt  TA-rich tract