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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaagttaatgtattaacctgccgttgccaaatttgactttttatctgataattttgtacggtattaatggcttttgactaacgaggaaactcacgttcagGCTCTGGGATCTAGGACAACAACGTTGCATTCATTCCTACGCGGTTCACACGGATTCTGTTTGGGCTTTTGCAAGCACGCCATCATTCAGTCATGTGTAT

Basic information

species Physcomitrella patens
transcript PP1S84_75V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S84_75V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GRMZM2G167999_T02 (Zea mays), 3'ss of exon 8
gaagttaatgtattaacctgccgttgccaaatttgactttttatctgataattttg-tacggtattaa---tggctt--ttgactaacgaggaaactcacgtt-cagGCTCTGGGATCTAGGACAACAACGTTGCATTCATTCCTACGCGGTTCACACGGATTCTGTTTGGGCTTTTGCAAGCACGCCATCATTCAGTCATGTGTAT
   || ||   |     ||  | |  | |   |   | | |    || ||   |   | | ||  |||   || | |  | ||   |       | | || || ||| || |||||||||||||| || |||||  ||||||| || || || || || ||||||||||||||  |||||||||| ||  ||||  ||||||| || 
---gtaaacacacagctctaacatctcaaccatctccctctctcatgttagcataaatgctgtggtaagtttgacatcatagatacatatttttatttactttgcagACTATGGGATCTAGGACAGCAGCGTTGTGTTCATTCTTATGCTGTGCATACTGATTCTGTTTGGGCACTTGCAAGCACTCCTGCATTTGGTCATGTCTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgataattttgtacggtattaatggcttttgactaacgaggaaactcacgttcagGCTCTGGGATCTAGGACAACAACGTTGCATTCATTCCTACGCGGTTCACACGGATTCTGTTTGGGCTTTTGCAAGCACGCCATCATTCAGTCATGTGTAT
                tattaat  TA-rich tract