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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cgagtgagttttctctgctgctccttgctccctttcttccgggcatcaatttggagtcatctcactttcgaatattccctaattattttgtgaattgcagATCGTGCAGCCGACATCTATTGGCTAGGAGAAAGCGTTGAAGGCGTAATTTTGGACTTGTACTTAGCATACCTGACGAGTGGGAAGTAGATTCGTTTAAG

Basic information

species Physcomitrella patens
transcript PP1S83_234V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18346983|gb|BJ179029.1|BJ179029
EST:     AGCTTTGAGTTATCAAACGTACGTTCTGCGTTGTTCTTGCCTTTGCATTG                         ATCGTGCAGCCGACATCTATTGGCTAGGAGAAAGCGTTGAAGGCGTAATTT
genomic: AGCTTTGAGTTATCAAACGTACGTTCTGCGTTGTTCTTGCCTTTGCATTGgtgggtttct ... tgaattgcagATCGTGCAGCCGACATCTATTGGCTAGGAGAAAGCGTTGAAGGCGTAATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcaatttggagtcatctcactttcgaatattccctaattattttgtgaattgcagATCGTGCAGCCGACATCTATTGGCTAGGAGAAAGCGTTGAAGGCGTAATTTTGGACTTGTACTTAGCATACCTGACGAGTGGGAAGTAGATTCGTTTAAG
                               ccctaat  putative branch site (score: 3)
                                  taattattttgtgaat  TA-rich tract