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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaggaatttcggataacttctgttgcttctatatcgaattacgatcttcttttatttttatattcttcttattttgcgtgagttagctatggtaaagaattgaattctacacctctgttaatggtcactgtaaattctgccagttttgaggggttctgaggtttttggattcacagGTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTGTTTCCGCTTTCCTAACAGTGTCGTCTCGCTCACCTTTCTTTTCTTGCCA

Basic information

species Physcomitrella patens
transcript PP1S83_158V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100421173|gb|BY976110.1|BY976110
EST:     GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCT                         GTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG
genomic: GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCTgtaaggaatt ... ggattcacagGTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG
EST: gi|100371199|gb|BY985987.1|BY985987
EST:     GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCT                         GTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG
genomic: GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCTgtaaggaatt ... ggattcacagGTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG
EST: gi|100417823|gb|BY975671.1|BY975671
EST:     GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCT                         GTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG
genomic: GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCTgtaaggaatt ... ggattcacagGTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG
EST: gi|18325374|gb|BJ157370.1|BJ157370
EST:     GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCT                         GTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG
genomic: GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCTgtaaggaatt ... ggattcacagGTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG
EST: gi|100445174|gb|BY964473.1|BY964473
EST:     GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCT                         GTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG
genomic: GACTATCTCCCGAATCGCGAAGCCCTGGTCGACTAGTCATTGACGTTTCTgtaaggaatt ... ggattcacagGTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tggtcactgtaaattctgccagttttgaggggttctgaggtttttggattcacagGTGAATTCCGTGTTGTGGAAGCGCGAGCTATGGCGGATGCCGTTCGCCCTGTTTCCGCTTTCCTAACAGTGTCGTCTCGCTCACCTTTCTTTTCTTGCCA
       tgtaaatt  TA-rich tract