1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tcagtatggagtaagtcgagaagtgatggttatgtgtttactgttacttttggttgatatgcctaacttcaaccatctttgtggacattgttttttttagGATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTGTTTGAATTGTATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAG
species | Physcomitrella patens |
transcript | PP1S82_30V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGCGCCACCAGCATTTCAAGGCTTGTTATTGCCTGACTCTGCTCCTCGAG GATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTGEST: gi|100426566|gb|BY977294.1|BY977294
genomic: AGCGCCACCAGCATTTCAAGGCTTGTTATTGCCTGACTCTGCTCCTCGAGgtttgttgga ... ttttttttagGATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTG
EST: AGCGCCACCAGCATTTCAAGGCTTGTTATTGCCTGACTCTGCTCCTCGAG GATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTGEST: gi|162228506|gb|FC404130.1|FC404130
genomic: AGCGCCACCAGCATTTCAAGGCTTGTTATTGCCTGACTCTGCTCCTCGAGgtttgttgga ... ttttttttagGATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTG
EST: AGCGCCACCAGCATTTCAAGGCTTGTTATTGCCTGACTCTGCTCCTCGAG GATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTGEST: gi|18326763|gb|BJ158763.1|BJ158763
genomic: AGCGCCACCAGCATTTCAAGGCTTGTTATTGCCTGACTCTGCTCCTCGAGgtttgttgga ... ttttttttagGATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTG
EST: AGCGCCACCAGCATTTCAAGGCTTGTTATTGCCTGACTCTGCTCCTCGAG GATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTG
genomic: AGCGCCACCAGCATTTCAAGGCTTGTTATTGCCTGACTCTGCTCCTCGAGgtttgttgga ... ttttttttagGATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTG
acttttggttgatatgcctaacttcaaccatctttgtggacattgttttttttagGATCGGCGGCTTTTAAAGCAGACTCAGCGCCTTGTGGCTTTTTATATTCTGTTTGAATTGTATCGTGGCGAACAATCAAGCATTAATCCCTTTATGTCAG
gcctaac putative branch site (score: 1)
ttgtttttttt putative PPT
acattgtttttttta TA-rich tract