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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttctctcagttacgctggttatggataccttctcagcttatgcattctttgatagtactgactctacttttctgcttttttgccgatcttggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTACGATTGAGTAAATCTGCCAATTCAAACAATGGGTTCCACGAGTAAGGTAT

Basic information

species Physcomitrella patens
transcript PP1S81_165V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18344845|gb|BJ176886.1|BJ176886
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTANAGTANATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|18361584|gb|BJ193650.1|BJ193650
EST:     GCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: GCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|18343450|gb|BJ175488.1|BJ175488
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|18370295|gb|BJ201897.1|BJ201897
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|100387189|gb|BY970333.1|BY970333
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
EST: gi|18343427|gb|BJ175465.1|BJ175465
EST:     CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAG                         AGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC
genomic: CTCTCCATTTCCTTTGCCGAGGCACAATCTGCATTTCTTCTGTGGTTGAGgtaacaatta ... tggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttgatagtactgactctacttttctgcttttttgccgatcttggatatcagAGATATGTATTTGTAGAGTAGATCGATCTGGTGCGTGCTTTGGCGAGTTACGATTGAGTAAATCTGCCAATTCAAACAATGGGTTCCACGAGTAAGGTAT
           tactgac  putative branch site (score: 1)
                               tttttt  TA-rich tract