1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tctcttttgttctgttaagtcttcctagcactaaccgagtcgctgtacctatcagcctgttataaagctacggagctaattaatatctgtgtgcaaacagCTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTTGAGCAGCTTTTAAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACA
species | Physcomitrella patens |
transcript | PP1S80_3V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAG CTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTTEST: gi|162201813|gb|FC377747.1|FC377747
genomic: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAGgttagtagcg ... gtgcaaacagCTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTT
EST: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAG CTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTTEST: gi|162155897|gb|FC332446.1|FC332446
genomic: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAGgttagtagcg ... gtgcaaacagCTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTT
EST: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAG CTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTTEST: gi|162155898|gb|FC332447.1|FC332447
genomic: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAGgttagtagcg ... gtgcaaacagCTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTT
EST: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAG CTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTTEST: gi|162243581|gb|FC419518.1|FC419518
genomic: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAGgttagtagcg ... gtgcaaacagCTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTT
EST: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAG CTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTTEST: gi|162201814|gb|FC377748.1|FC377748
genomic: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAGgttagtagcg ... gtgcaaacagCTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTT
EST: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAG CTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTT
genomic: TGTATCACAAATCCTGCTTCCGATGCAACCATTGCAAAGGGACTCTCAAGgttagtagcg ... gtgcaaacagCTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTT
tacctatcagcctgttataaagctacggagctaattaatatctgtgtgcaaacagCTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTTGAGCAGCTTTTAAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACA
aattaat putative branch site (score: 10)
taattaatatctgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tctcttttgttctgttaagtcttcctagcactaaccgagtcgctgtacctatcagcctgttataaagctacggagctaattaatatctgtgtgcaaacagCTTGCAAACTATGCGTCTCTAGAAGGAGTGCTCTACTGCAAGCCACACTTTGAGCAGCTTTTAAAGGTCACTGGGAGTTTTGACAAGAGTTTCGAACACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT