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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcttaataaggcatatttcattttatttctgtatgaaagtcctacatgaaagttataccatccacttagatgacaaggacacctggtaaattctttgcagGAAGTGCGGGTGATGTGCTGGAGGACAACCCTGTTGGCCGTCTGAAAGTTTTTATCTATGACATTCCGAG

Basic information

species Physcomitrella patens
transcript PP1S7_455V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162156655|gb|FC333303.1|FC333303
EST:     ATTTTGTTCAAGATGTCACTGCGGAAATGGGTCATCAACGAATTTCAG                         GAAGTGCGGGTGATGTGCTGGAGGACAACCCTGTTGGCCGTCTGAAAGTTT
genomic: ATTTTGTTCAAGATGTCACTGCGGAAATGGGTCATCAACGAATTTCAGgtaccgcatt ... ttctttgcagGAAGTGCGGGTGATGTGCTGGAGGACAACCCTGTTGGCCGTCTGAAAGTTT
EST: gi|162180723|gb|FC357808.1|FC357808
EST:     CTATTTTGTTCAAGATGTCACTGCGGAAATGGGTCATCAACGAATTTCAG                         GAAGTGCGGGTGATGTGCTGGAGGACAACCCTGTTGGCCGTCTGAAAGTTT
genomic: CTATTTTGTTCAAGATGTCACTGCGGAAATGGGTCATCAACGAATTTCAGgtaccgcatt ... ttctttgcagGAAGTGCGGGTGATGTGCTGGAGGACAACCCTGTTGGCCGTCTGAAAGTTT
EST: gi|18327080|gb|BJ159081.1|BJ159081
EST:     CTATTTTGTTCAAGATGTCACTGCGGAAATGGGTCATCAACGAATTTCAN                         GAAGTGCGGGTGATGTGCTGGAGG
genomic: CTATTTTGTTCAAGATGTCACTGCGGAAATGGGTCATCAACGAATTTCAGgtaccgcatt ... ttctttgcagGAAGTGCGGGTGATGTGCTGGAGG
EST: gi|100393413|gb|BY953389.1|BY953389
EST:     CTATTTTGTTCAAGGTGTCACTGCGGAAATGGGTCATCAACGATTTTCAG                         GAAGTGCGGGTGATGTGCTGGAGGACAACCCTGTTGG
genomic: CTATTTTGTTCAAGATGTCACTGCGGAAATGGGTCATCAACGAATTTCAGgtaccgcatt ... ttctttgcagGAAGTGCGGGTGATGTGCTGGAGGACAACCCTGTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgaaagttataccatccacttagatgacaaggacacctggtaaattctttgcagGAAGTGCGGGTGATGTGCTGGAGGACAACCCTGTTGGCCGTCTGAAAGTTTTTATCTATGACATTCCGAG
                                             ttctttgc  CT-rich tract
                                         taaattcttt  TA-rich tract