1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tcagttgcaactccttgctcagatctcggtaatcattagcattcatggaaccatcgtagcataagcaaatgttctcattcctttgtgtttatttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGATGAAAACTTCGGAGAGTGGTATTCAGAT
species | Physcomitrella patens |
transcript | PP1S7_175V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|18344073|gb|BJ176112.1|BJ176112
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|18350576|gb|BJ182627.1|BJ182627
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|100443225|gb|BY963521.1|BY963521
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|18360143|gb|BJ192205.1|BJ192205
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|100439329|gb|BY980209.1|BY980209
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTATGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|100451310|gb|CJ974701.1|CJ974701
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|18349320|gb|BJ181369.1|BJ181369
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|100389088|gb|BY952292.1|BY952292
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|18364143|gb|BJ196216.1|BJ196216
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|18348271|gb|BJ180318.1|BJ180318
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|162237815|gb|FC413924.1|FC413924
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGEST: gi|100370301|gb|BY985342.1|BY985342
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
EST: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAG CCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
genomic: GGTTGTGAAAGACAAGAAGCCAGTGGTGCACGGAGGCGCACAAGGAGGAGgttaggaagc ... atttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGG
tggaaccatcgtagcataagcaaatgttctcattcctttgtgtttatttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGATGAAAACTTCGGAGAGTGGTATTCAGAT
tttattt CT-rich tract
tgtttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcagttgcaactccttgctcagatctcggtaatcattagcattcatggaaccatcgtagcataagcaaatgttctcattcctttgtgtttatttgggcagCCAAGAAGGAGGTGAAGAAGGAATCGGGACTTGGTCTTGCTTTTAAGAAGGATGAAAACTTCGGAGAGTGGTATTCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG