1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gcttcttacggaacgattttcttgtcacactctttttcgttttcgttttgttttggataagcccgtagttcactgatgagctcgtttatcttttgtgcagGTTACGAATTTGTTGGAAGAAGCAAAAGGAGGAGCTGGACACCCAAATGTTGGCCTATCACTTTTGCCAGGTCATCTATCTGGAGCCGCAGGAAGCACTC
species | Physcomitrella patens |
transcript | PP1S7_163V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGAGGAGCTTTACGCGCAATGGATTTCGCTGCCCGACACGCAGCGTCTG GTTACGAATTTGTTGGAAGAAGCAAAAGGAGGAGCTGGACACCCAAATGTTEST: gi|100391742|gb|BY989530.1|BY989530
genomic: TGGAGGAGCTTTACGCGCAATGGATTTCGCTGCCCGACACGCAGCGTCTGgtgagtgatt ... ttttgtgcagGTTACGAATTTGTTGGAAGAAGCAAAAGGAGGAGCTGGACACCCAAATGTT
EST: TGGAGGAGCTTTACGCGCAATGGATTTCGCTGCCCGACACGCAGCGTCTG GTTACGAATTTGTTGGAAGAAGCAAAAGGAGGAGCTGGACACCCAAATGTT
genomic: TGGAGGAGCTTTACGCGCAATGGATTTCGCTGCCCGACACGCAGCGTCTGgtgagtgatt ... ttttgtgcagGTTACGAATTTGTTGGAAGAAGCAAAAGGAGGAGCTGGACACCCAAATGTT
ttttgttttggataagcccgtagttcactgatgagctcgtttatcttttgtgcagGTTACGAATTTGTTGGAAGAAGCAAAAGGAGGAGCTGGACACCCAAATGTTGGCCTATCACTTTTGCCAGGTCATCTATCTGGAGCCGCAGGAAGCACTC
cactgat putative branch site (score: 8)
ctcgtttatctttt putative PPT
tttatctttt TA-rich tract