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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtagcataagctatggatttgaagctttgatgatgtgattcaagggactgcccgtggatgtacaggcctgaaaatgtatagtacttgttttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAGAGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCA

Basic information

species Physcomitrella patens
transcript PP1S7_156V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67575552|gb|BJ948376.1|BJ948376
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100446463|gb|CJ970762.1|CJ970762
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208390242|gb|DC942007.1|DC942007
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|18370458|gb|BJ202060.1|BJ202060
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100402225|gb|BY973279.1|BY973279
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTGTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|162223608|gb|FC399420.1|FC399420
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100449226|gb|CJ973525.1|CJ973525
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100450295|gb|CJ974191.1|CJ974191
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100353250|gb|BY964711.1|BY964711
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|67716523|gb|BJ966783.1|BJ966783
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCTCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|162270682|gb|FC446295.1|FC446295
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208357950|gb|DC943062.1|DC943062
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100412106|gb|BY956417.1|BY956417
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208354657|gb|DC934301.1|DC934301
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208360044|gb|DC934933.1|DC934933
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|162274023|gb|FC450370.1|FC450370
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100421795|gb|BY993647.1|BY993647
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|67703099|gb|BJ963332.1|BJ963332
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208363910|gb|DC939559.1|DC939559
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCCTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100424973|gb|BY976908.1|BY976908
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208352142|gb|DC906273.1|DC906273
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|18361927|gb|BJ193994.1|BJ193994
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100392847|gb|BY971911.1|BY971911
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100447685|gb|CJ971984.1|CJ971984
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100383551|gb|BY950335.1|BY950335
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100388158|gb|BY988631.1|BY988631
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100437573|gb|BY979720.1|BY979720
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208390935|gb|DC942239.1|DC942239
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208361725|gb|DC934965.1|DC934965
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100391526|gb|BY971701.1|BY971701
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100405539|gb|BY973727.1|BY973727
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208346716|gb|DC913362.1|DC913362
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|67716406|gb|BJ966666.1|BJ966666
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208375943|gb|DC914410.1|DC914410
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100386816|gb|BY988085.1|BY988085
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208391473|gb|DC937621.1|DC937621
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208372285|gb|DC936443.1|DC936443
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208353244|gb|DC913918.1|DC913918
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100448570|gb|CJ972869.1|CJ972869
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|67701897|gb|BJ962130.1|BJ962130
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208393881|gb|DC938464.1|DC938464
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208358324|gb|DC930709.1|DC930709
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|67578178|gb|BJ950345.1|BJ950345
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|18366063|gb|BJ198141.1|BJ198141
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100420571|gb|BY976074.1|BY976074
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100384726|gb|BY950716.1|BY950716
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100360822|gb|BY965918.1|BY965918
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|67704574|gb|BJ964807.1|BJ964807
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|162203673|gb|FC378548.1|FC378548
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100383470|gb|BY950254.1|BY950254
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208386794|gb|DC937186.1|DC937186
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100405432|gb|BY955522.1|BY955522
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|18331338|gb|BJ163348.1|BJ163348
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208391423|gb|DC937571.1|DC937571
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|67704359|gb|BJ964592.1|BJ964592
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208366691|gb|DC931348.1|DC931348
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|67508690|gb|BJ941551.1|BJ941551
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|67703488|gb|BJ963721.1|BJ963721
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208355278|gb|DC929767.1|DC929767
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|208355422|gb|DC929841.1|DC929841
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
EST: gi|100355867|gb|BY946078.1|BY946078
EST:     ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAG                         GCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG
genomic: ATCCTGCTGGTTTGCGCCACGCGGGGATCTTTAAGATCTTTTTTGAGGAGgtatagtcga ... ttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggactgcccgtggatgtacaggcctgaaaatgtatagtacttgttttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAGAGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCA
                                       cttgtttt  CT-rich tract
                                     tacttgttttattta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
agtagcataagctatggatttgaagctttgatgatgtgattcaagggactgcccgtggatgtacaggcctgaaaatgtatagtacttgttttatttacagGCATGGCTCGCAAGAAAATCCGAGAGTATGACTCCAAGCGCATCCTGAAAGAGCACTTGAAGAAGCTTGCTGGCATTGACATTGCCATAAAATCCGCCCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC