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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcttgaaggatatggagtagcctcgtgtgaatatcatcttacggattccttctgttccttcatttagagtggtggatttatatctgtgctgtgtggcagATGGCAATGGATTCAAGACCAGTGTCATGCGCCTCGGTGCAGACGTTATTGTTTTTACTCGCCAGCCAAATAACAAGGG

Basic information

species Physcomitrella patens
transcript PP1S79_35V6.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S79_35V6.1 (Physcomitrella patens), 3'ss of exon 1
lower sequence: GLYMA16G24450.1 (Glycine max), 3'ss of exon 4
gtcttgaaggatatggagtagcctcgtgtgaatatcatcttacggattccttctgttccttca--tttagagtggtggatttatatctgtgctgtgtggcagATGGCAATGGATTCAAGACCAGTGTCATGCGCCTCGGTGCAGACGTTATTGTTTTTACTCGCCAGCCAAATAACAAGGG
 | || |     ||  | |  |    | |   | ||    |     |||  | | |  |   |  | |  | |     | | | |||  || | | |   ||||||||||||||||||||| |||  |||| | || ||||| || ||||||||||| | |||   || |   |   ||| 
-ttttcagatcaataaaatttctctctctctctctctctctgaaatttctctttctctcagaaattcttcactttccaagtaacatc-atgttttattctagATGGCAATGGATTCAAGACTAGTACCATGAGACTGGGTGCTGATGTTATTGTTTTCAGTCG--GGCAATGCATTCAGG-


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attccttctgttccttcatttagagtggtggatttatatctgtgctgtgtggcagATGGCAATGGATTCAAGACCAGTGTCATGCGCCTCGGTGCAGACGTTATTGTTTTTACTCGCCAGCCAAATAACAAGGG
                               atttatatct  TA-rich tract