Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctggaactttgagttgtacactggagcaatttgtttgactcttgctgcatttgtgccattaggccggcgctgaggccgggtggtttggcctagttgttgtagGAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGATTGGCTGTAGGCTCATTGCAATATATTTCGCGTCGGTATGGCGTCCGAG

Basic information

species Physcomitrella patens
transcript PP1S795_4V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18343819|gb|BJ175857.1|BJ175857
EST:     GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCT                         GAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTgtgagtctgg ... gttgttgtagGAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA
EST: gi|67574773|gb|BJ947597.1|BJ947597
EST:     GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCT                         GAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTgtgagtctgg ... gttgttgtagGAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA
EST: gi|208387277|gb|DC933028.1|DC933028
EST:     GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTTTGTTGT                   
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACC-------Tgtgagtctgg ... gttg
EST: gi|208387277|gb|DC933028.1|DC933028
EST:     GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTTTGTTGT                   
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACC-------Tgtgagtctgg ... gttg
EST: gi|208387277|gb|DC933028.1|DC933028
EST:     GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTTTGTTGT                   
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACC-------Tgtgagtctgg ... gttg
EST: gi|67702801|gb|BJ963034.1|BJ963034
EST:     GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCT                         GAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTgtgagtctgg ... gttgttgtagGAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA