1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gagtactgctttgcttgcgcacaaaatgctagcatgagtttgattgtggagtgtgttcggttttttactaaattcttcacgagtcgtcgattggatgcagATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTATGGAGTGTTCATATGCCTGGACTGTTCAGCTCTACATCGTAGTCTCGGTG
species | Physcomitrella patens |
transcript | PP1S795_4V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAG ATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTATEST: gi|18348384|gb|BJ180432.1|BJ180432
genomic: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAGgtgagatgct ... ttggatgcagATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTAT
EST: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAG ATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTATEST: gi|208353632|gb|DC938741.1|DC938741
genomic: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAGgtgagatgct ... ttggatgcagATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTAT
EST: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAG ATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTATEST: gi|208393935|gb|DC938490.1|DC938490
genomic: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAGgtgagatgct ... ttggatgcagATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTAT
EST: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAG ATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTATEST: gi|208370738|gb|DC936170.1|DC936170
genomic: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAGgtgagatgct ... ttggatgcagATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTAT
EST: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAG ATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTATEST: gi|208393884|gb|DC938467.1|DC938467
genomic: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAGgtgagatgct ... ttggatgcagATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTAT
EST: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAG ATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTAT
genomic: TAGATCGCGATTTGCTGTTTCGGAAAATGAAGACCAAGTCCGAAAACAAGgtgagatgct ... ttggatgcagATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTAT
gtggagtgtgttcggttttttactaaattcttcacgagtcgtcgattggatgcagATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTATGGAGTGTTCATATGCCTGGACTGTTCAGCTCTACATCGTAGTCTCGGTG
tactaaa putative branch site (score: 1)
ttttttactaaattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagtactgctttgcttgcgcacaaaatgctagcatgagtttgattgtggagtgtgttcggttttttactaaattcttcacgagtcgtcgattggatgcagATGTGTTTCGACTGCAATTCGAAGAATCCCACTTGGGCGTCAGTGACGTATGGAGTGTTCATATGCCTGGACTGTTCAGCTCTACATCGTAGTCTCGGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC