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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacgccctcttgctcagttacactcagctgcataccttaagatcagttttaactgttgtattttgaaacatgtttgaaatttgtggaaatggttattctttcggctaagcctgtgtcttaacctaacaacgtcccgctgatttctgcagGCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTTTCGGTGATTGACCAAGTTTTCAGCCCCGGAAGCACTGGTTTAATCTGGT

Basic information

species Physcomitrella patens
transcript PP1S78_96V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67726536|gb|BJ976795.1|BJ976795
EST:     GTGTCTTTGCTTTTGATGGTGCTGCGCCTGAGACGATCAATGGCCGACTG                         GCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTT
genomic: GTGTCTTTGCTTTTGATGGTGCTGCGCCTGAGACGATCAATGGCCGACTGgtatgacgcc ... atttctgcagGCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTT
EST: gi|67718036|gb|BJ968295.1|BJ968295
EST:     GTGTCTTTGCTTTTGATGGTGCTGCGCCTGAGACGATCAATGGCCGACTG                         GCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTT
genomic: GTGTCTTTGCTTTTGATGGTGCTGCGCCTGAGACGATCAATGGCCGACTGgtatgacgcc ... atttctgcagGCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTT
EST: gi|208388552|gb|DC953384.1|DC953384
EST:     GTGTCTTTGCTTTTGATGGTGCTGCGCCTGAGACGATCAATGGCCGACTG                         GCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTT
genomic: GTGTCTTTGCTTTTGATGGTGCTGCGCCTGAGACGATCAATGGCCGACTGgtatgacgcc ... atttctgcagGCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTT
EST: gi|208370084|gb|DC940377.1|DC940377
EST:     GTGTCTTTGCTTTTGATGGTGCTGCGCCTGAGACGATCAATGGCCGACTG                         GCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTT
genomic: GTGTCTTTGCTTTTGATGGTGCTGCGCCTGAGACGATCAATGGCCGACTGgtatgacgcc ... atttctgcagGCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctttcggctaagcctgtgtcttaacctaacaacgtcccgctgatttctgcagGCGATGTTGGGGTTCGTGTGGGCATTGGTTGGGGAGAATGCCACTGGTCTTTCGGTGATTGACCAAGTTTTCAGCCCCGGAAGCACTGGTTTAATCTGGT
                                              tttctgc  CT-rich tract