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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgttatctataggaatgtgtgagtgtttgggtattccattgtgagcggacgtggttaaaactgcgtttgaggtcccctgggatgttctgtgaattgttagtgttgagaagtctttttgaggaggttacttagcatctgcggaagcacgctgataaggtttctgtattggaatgattcagAGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACTTAATCCAGTCAATATTCTGGGTTCTTACCATGGGGAAAGGGAGGGGATT

Basic information

species Physcomitrella patens
transcript PP1S78_79V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100421414|gb|BY976185.1|BY976185
EST:     AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAG                         AGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT
genomic: AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAGgttgttatct ... aatgattcagAGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT
EST: gi|100414566|gb|BY956755.1|BY956755
EST:     AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAG                         AGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT
genomic: AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAGgttgttatct ... aatgattcagAGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT
EST: gi|100383797|gb|BY969326.1|BY969326
EST:     AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAG                         AGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT
genomic: AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAGgttgttatct ... aatgattcagAGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT
EST: gi|100450444|gb|CJ974266.1|CJ974266
EST:     AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAG                         AGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT
genomic: AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAGgttgttatct ... aatgattcagAGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT
EST: gi|100399161|gb|BY954230.1|BY954230
EST:     AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAG                         AGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT
genomic: AAGACGTTTGCAGCGTGCTTGAGGTTTAGAGCCATCTACTATCACTCCAGgttgttatct ... aatgattcagAGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacttagcatctgcggaagcacgctgataaggtttctgtattggaatgattcagAGGACAACGCATCCAGGGGAATAGTGTCGTCGACTTTCCAGTAGCAATACTTAATCCAGTCAATATTCTGGGTTCTTACCATGGGGAAAGGGAGGGGATT
                      cgctgat  putative branch site (score: 4)
                                             aatgatt  TA-rich tract