1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatggcttatccaagtgggagctgtccgcaacccagtgcaaggaatttcgcgaatatggtagattttgtaactagggtttgcttgtttttcttttcacagGGGTGTTGAAGTAGAAGAATCAGGATGTGGGCAGCCGGATGTTTGGCGTCGTGTTGCGCATCATGCGCATGCTCGGCATGTCAGGGGGTAGCAAGTGGTA
species | Physcomitrella patens |
transcript | PP1S78_51V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GGGGGACAATTGCAACAGGTTAGACTTTTCTACGATCGTTTTCTGAATAG GGGTGTTGAAGTAGAAGAATCAGGATGTGGGCAGCCGGATGTTTGGCGTCGEST: gi|18355465|gb|BJ187524.1|BJ187524
genomic: GGGGGACAATTGCAACAGGTTAGACTTTTCTACGATCGTTTTCTGAATAGgtgtgcaatt ... cttttcacagGGGTGTTGAAGTAGAAGAATCAGGATGTGGGCAGCCGGATGTTTGGCGTCG
EST: GGGGGACAATTGCAACAGGTTAGACTTTTCTACGATCGTTTTCTGAATAG GGGTGTTGAAGTAGAAGAATCAGGATGTGGGCAGCCGGATGTTTGGCGTCGEST: gi|18357289|gb|BJ189348.1|BJ189348
genomic: GGGGGACAATTGCAACAGGTTAGACTTTTCTACGATCGTTTTCTGAATAGgtgtgcaatt ... cttttcacagGGGTGTTGAAGTAGAAGAATCAGGATGTGGGCAGCCGGATGTTTGGCGTCG
EST: GGGGGACAATTGCAACAGGTTAGACTTTTCTACGATCGTTTTCTGAATAG GGGTGTTGAAGTAGAAGAATCAGGATGTGGGCAGCCGGATGTTTGGCGTCG
genomic: GGGGGACAATTGCAACAGGTTAGACTTTTCTACGATCGTTTTCTGAATAGgtgtgcaatt ... cttttcacagGGGTGTTGAAGTAGAAGAATCAGGATGTGGGCAGCCGGATGTTTGGCGTCG
tttcgcgaatatggtagattttgtaactagggtttgcttgtttttcttttcacagGGGTGTTGAAGTAGAAGAATCAGGATGTGGGCAGCCGGATGTTTGGCGTCGTGTTGCGCATCATGCGCATGCTCGGCATGTCAGGGGGTAGCAAGTGGTA
ttgtaac putative branch site (score: 6)
tttgcttgtttttctt putative PPT
tttttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatggcttatccaagtgggagctgtccgcaacccagtgcaaggaatttcgcgaatatggtagattttgtaactagggtttgcttgtttttcttttcacagGGGTGTTGAAGTAGAAGAATCAGGATGTGGGCAGCCGGATGTTTGGCGTCGTGTTGCGCATCATGCGCATGCTCGGCATGTCAGGGGGTAGCAAGTGGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG