1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggttcaatttggtttcttgggccgcgagaagagagggttgcgtgccggaatttcgtttgtcgtcgtgtgtgaatgtagatgtgtggtggcgattgtgcagGTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTGGCGCCAAGGCAATTGGTTGCCTTGAAGTCGGAATGCAAGAGTAGCGTGC
species | Physcomitrella patens |
transcript | PP1S78_3V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTCTTGCTAGTGTTGCAGGCCTGCAGTTGTTGGTTCGCCTCAGTCTCAG GTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTGEST: gi|18361974|gb|BJ194041.1|BJ194041
genomic: GCTCTTGCTAGTGTTGCAGGCCTGCAGTTGTTGGTTCGCCTCAGTCTCAGgtgcgttttg ... gattgtgcagGTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTG
EST: GCTCTTGCTAGTGTTGCAGGCCTGCAGTTGTTGGTTCGCCTCAGTCTCAG GTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTGEST: gi|162170405|gb|FC346797.1|FC346797
genomic: GCTCTTGCTAGTGTTGCAGGCCTGCAGTTGTTGGTTCGCCTCAGTCTCAGgtgcgttttg ... gattgtgcagGTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTG
EST: TGCAGTTGTTGGTTCGCCTCAGTCTCAG GTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTGEST: gi|100442802|gb|BY981627.1|BY981627
genomic: TGCAGTTGTTGGTTCGCCTCAGTCTCAGgtgcgttttg ... gattgtgcagGTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTG
EST: GCTCTTGCTAGTGTTGCAGGCCTGCAGTTGTTGGTTCGCCTCAGTCTCAG GTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTG
genomic: GCTCTTGCTAGTGTTGCAGGCCTGCAGTTGTTGGTTCGCCTCAGTCTCAGgtgcgttttg ... gattgtgcagGTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggttcaatttggtttcttgggccgcgagaagagagggttgcgtgccggaatttcgtttgtcgtcgtgtgtgaatgtagatgtgtggtggcgattgtgcagGTCGTCGTGATGAATGCGACGTTGAGTTCTGCCGTGGGCAGTGTGGGTGTGGCGCCAAGGCAATTGGTTGCCTTGAAGTCGGAATGCAAGAGTAGCGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA