1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...taattgtcattattgtcaggttttgtttttggtatcaggtgggctcaacttagtgattagccgagcattaggatctgattaaggtgttggaggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGTGCCTGGAGGCGCTGCGGCGTATGGACAGGCTCATCCGACTTCGTCTCC
species | Physcomitrella patens |
transcript | PP1S78_27V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC GGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGEST: gi|18370158|gb|BJ201760.1|BJ201760
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... aggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGG
EST: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC GGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGEST: gi|18374378|gb|BJ205956.1|BJ205956
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... aggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGG
EST: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC GGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGEST: gi|18373692|gb|BJ205270.1|BJ205270
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... aggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGG
EST: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC GGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGEST: gi|18348835|gb|BJ180884.1|BJ180884
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... aggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGG
EST: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC GGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGEST: gi|100442322|gb|BY981346.1|BY981346
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... aggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGG
EST: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC GGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGEST: gi|18365061|gb|BJ197135.1|BJ197135
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... aggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGG
EST: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC GGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGEST: gi|100373686|gb|BY967780.1|BY967780
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... aggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGG
EST: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATC GGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGG
genomic: GTGTCGCGGTCTGAGCACTTCAGATACACACAGCTGACGCTGCCTTAATCgtgagttctt ... aggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGG
caacttagtgattagccgagcattaggatctgattaaggtgttggaggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGTGCCTGGAGGCGCTGCGGCGTATGGACAGGCTCATCCGACTTCGTCTCC
atctgat putative branch site (score: 4)
tgattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taattgtcattattgtcaggttttgtttttggtatcaggtgggctcaacttagtgattagccgagcattaggatctgattaaggtgttggaggcttgaagGGTTTGTGAGAATGAGTGGTAATCCATATGCCCACTATGACAATCAAGGGGTGCCTGGAGGCGCTGCGGCGTATGGACAGGCTCATCCGACTTCGTCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG