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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgtgtgtgcgtgcgtgtgtcttttctcatgttcagatattttcatgaatttgagattagtttcctctttggaagtttggggttttacagtctttgtgagtttatttagcttggagtatcaacgactaatcaccgattcaaattgcagGAAAAGTCTCTGACATTTTTTCGAAGGGAGGACTCAAAATCTGTGCAAGCAGCAGCATTGACACCTCTTATTGTTTTATTAGAACTAAACATGGCACGTT

Basic information

species Physcomitrella patens
transcript PP1S78_227V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18362324|gb|BJ194394.1|BJ194394
EST:     TTATTAAAAAGATTGGACCCCGAGCTTTGCACTATGCGGCTCTCTTGAAG                         GAAAAGTCTCTGACATTTTTTCGAAGGGAGGACTCAAAATCTGTGCAAGCA
genomic: TTATTAAAAAGATTGGACCCCGAGCTTTGCACTATGCGGCTCTCTTGAAGgtgtgtgtgt ... caaattgcagGAAAAGTCTCTGACATTTTTTCGAAGGGAGGACTCAAAATCTGTGCAAGCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgagtttatttagcttggagtatcaacgactaatcaccgattcaaattgcagGAAAAGTCTCTGACATTTTTTCGAAGGGAGGACTCAAAATCTGTGCAAGCAGCAGCATTGACACCTCTTATTGTTTTATTAGAACTAAACATGGCACGTT
                              gactaat  putative branch site (score: 2)
     agtttattta  TA-rich tract