1 5' 3' | 2 5' 3' | 3 5' 3' |
...agtttagagattctcttgtgaaagagggagctcacgtaagcctagatgtgttcttgggttagtgggtgttgttgcagtactgacagggttcattttttagTGTGTGGTTTCTTCAGACGGCAGTTGTTGAAGCTATTCTGAGCGCGAAAAAGGTATTTGCGAGACAGACTTCGAGGGCATGGGGAGGAAACCATGCTGTG
species | Physcomitrella patens |
transcript | PP1S78_152V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GACCAGATCCTACCTTCCCCTGCTGCTGCCGCTTGCGCACCAGGTGGTAA TGTGTGGTTTCTTCAGACGGCAGTTGTTGAAGCTATTCTGAGCGCGAAAAAEST: gi|18353771|gb|BJ185826.1|BJ185826
genomic: GACCAGATCCTACCTTCCCCTGCTGCTGCCGCTTGCGCACCAGGTGGTAAgtaagtacat ... cattttttagTGTGTGGTTTCTTCAGACGGCAGTTGTTGAAGCTATTCTGAGCGCGAAAAA
EST: GACCAGATCCTACCTTCCCCTGCTGCTGCCGCTTGCGCACCAGGTGGTAA TGTGTGGTTTCTTCAGACGGCAGTTGTTGAAGCTATTCTGAGCGCGAAAAA
genomic: GACCAGATCCTACCTTCCCCTGCTGCTGCCGCTTGCGCACCAGGTGGTAAgtaagtacat ... cattttttagTGTGTGGTTTCTTCAGACGGCAGTTGTTGAAGCTATTCTGAGCGCGAAAAA
atgtgttcttgggttagtgggtgttgttgcagtactgacagggttcattttttagTGTGTGGTTTCTTCAGACGGCAGTTGTTGAAGCTATTCTGAGCGCGAAAAAGGTATTTGCGAGACAGACTTCGAGGGCATGGGGAGGAAACCATGCTGTG
tactgac putative branch site (score: 11)
ttcatttttt putative PPT
ttcatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtttagagattctcttgtgaaagagggagctcacgtaagcctagatgtgttcttgggttagtgggtgttgttgcagtactgacagggttcattttttagTGTGTGGTTTCTTCAGACGGCAGTTGTTGAAGCTATTCTGAGCGCGAAAAAGGTATTTGCGAGACAGACTTCGAGGGCATGGGGAGGAAACCATGCTGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgca