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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgcttgtggtttgaatgagttggtggggttccgatggaagtgtgtatgtcaattgtatgaatgtgtgtgtgtgtgtgtggtttctgcgcatgcagagtaagattgtccaattttcttatcaggggtcggtttgttgttattgtcgttgtacatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCCGCAGCCGCCCCGGATGCCGCCGCAGAGGCGCCCAAGGGTTTTACCCCGC

Basic information

species Physcomitrella patens
transcript PP1S77_69V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228363|gb|FC404390.1|FC404390
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162263491|gb|FC439429.1|FC439429
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162259731|gb|FC436737.1|FC436737
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162196545|gb|FC375459.1|FC375459
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162280466|gb|FC456379.1|FC456379
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|7046912|gb|AW476749.1|AW476749
EST:     CCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: CCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162251148|gb|FC426412.1|FC426412
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162202559|gb|FC379242.1|FC379242
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162269718|gb|FC444897.1|FC444897
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162202560|gb|FC379243.1|FC379243
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162211357|gb|FC387587.1|FC387587
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208344500|gb|DC905061.1|DC905061
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162184228|gb|FC360482.1|FC360482
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208353909|gb|DC914077.1|DC914077
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162259747|gb|FC436545.1|FC436545
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162230265|gb|FC406621.1|FC406621
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208392244|gb|DC949620.1|DC949620
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|67573570|gb|BJ946394.1|BJ946394
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162220825|gb|FC395802.1|FC395802
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162262478|gb|FC439508.1|FC439508
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|7067404|gb|AW497259.1|AW497259
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162280467|gb|FC456380.1|FC456380
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162263490|gb|FC439428.1|FC439428
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162200328|gb|FC376639.1|FC376639
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162218693|gb|FC394243.1|FC394243
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208365067|gb|DC943376.1|DC943376
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162247443|gb|FC425009.1|FC425009
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208381390|gb|DC927826.1|DC927826
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162200329|gb|FC376640.1|FC376640
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162213903|gb|FC390102.1|FC390102
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162251149|gb|FC426413.1|FC426413
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162232257|gb|FC407781.1|FC407781
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162269757|gb|FC445638.1|FC445638
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162266332|gb|FC443187.1|FC443187
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|67720621|gb|BJ970880.1|BJ970880
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162232256|gb|FC407780.1|FC407780
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162208465|gb|FC384428.1|FC384428
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162210948|gb|FC387046.1|FC387046
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162259746|gb|FC436544.1|FC436544
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162266333|gb|FC443188.1|FC443188
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162278803|gb|FC454646.1|FC454646
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162269719|gb|FC444898.1|FC444898
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162196630|gb|FC374920.1|FC374920
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208367210|gb|DC935814.1|DC935814
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162210947|gb|FC387045.1|FC387045
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208346342|gb|DC905275.1|DC905275
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|100401407|gb|BY990987.1|BY990987
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|67696955|gb|BJ957188.1|BJ957188
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162230266|gb|FC406622.1|FC406622
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208347078|gb|DC901871.1|DC901871
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162211358|gb|FC387588.1|FC387588
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|67702127|gb|BJ962360.1|BJ962360
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162228362|gb|FC404389.1|FC404389
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162243064|gb|FC417912.1|FC417912
EST:     CTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: CTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208395941|gb|DC915701.1|DC915701
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208381270|gb|DC919160.1|DC919160
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162221541|gb|FC397558.1|FC397558
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|67703082|gb|BJ963315.1|BJ963315
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|208379264|gb|DC918950.1|DC918950
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162201410|gb|FC377136.1|FC377136
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162212328|gb|FC388056.1|FC388056
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162254197|gb|FC429721.1|FC429721
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162259732|gb|FC436738.1|FC436738
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162247444|gb|FC425010.1|FC425010
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162224126|gb|FC399190.1|FC399190
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162278804|gb|FC454647.1|FC454647
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|67508194|gb|BJ941065.1|BJ941065
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|67694870|gb|BJ955103.1|BJ955103
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162220824|gb|FC395801.1|FC395801
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162269758|gb|FC445639.1|FC445639
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162218692|gb|FC394242.1|FC394242
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162186976|gb|FC363382.1|FC363382
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|67571529|gb|BJ944353.1|BJ944353
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162196546|gb|FC375460.1|FC375460
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162224125|gb|FC399189.1|FC399189
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
EST: gi|162221540|gb|FC397557.1|FC397557
EST:     GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAG                         GGTCAGAGACTCGCAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC
genomic: GTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 66

AGCTACTTCCGCGGCCTCCGTTGCCCTGATTGCACCCCAGGCCTCATCCGGTGCCGCTGTCAGCACCAGGGGTGTCTCCCTTCGCGTCTCTAGCCTCCAGgtgcgcttgt ... acatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCCGCAGCCGCCCCGGATGCCGCCGCAGAGGCGCCCAAGGGTTTTACCCCGC




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtccaattttcttatcaggggtcggtttgttgttattgtcgttgtacatacatagGGTCAGAGACTCGTAGCAGTGTGCAATAGTCACCGTGTGGTGGCTAAAGCCGCAGCCGCCCCGGATGCCGCCGCAGAGGCGCCCAAGGGTTTTACCCCGC
     attttcttat  TA-rich tract