1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aatctgatactctcatgtcctcttttttcttaccatatccgcttttataagtttttcacccgattattgaattttaaggcaaaccttggatctccaacagAACGTTCGTCTTACTGTCGAGCTATTAGTGGATAGCCGTTGAATTGCAAGCTCTTGGGACGAATTGGGATGGAGAACCAAGAG
species | Physcomitrella patens |
transcript | PP1S77_115V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGCATCTTGGAAGCGCAGTGGGGACTTGTAGCGAGACTAGGCTCAAGCA AACGTTCGTCTTACTGTCGAGCTATTAGTGGATAGCCGTTGAATTGCAAGCEST: gi|100386106|gb|BY970045.1|BY970045
genomic: TTGCATCTTGGAAGCGCAGTGGGGACTTGTAGCGAGACTAGGCTCAAGCAgtaagatcac ... tctccaacagAACGTTCGTCTTACTGTCGAGCTATTAGTGGATAGCCGTTGAATTGCAAGC
EST: TTGCATCTTGGAAGCGCAGTGGGGACTTGTAGCGAGACTAGGCTCAAGCA AACGTTCGTCTTACTGTCGAGCTATTAGTGGATAGCCGTTGAATTGCAAGC
genomic: TTGCATCTTGGAAGCGCAGTGGGGACTTGTAGCGAGACTAGGCTCAAGCAgtaagatcac ... tctccaacagAACGTTCGTCTTACTGTCGAGCTATTAGTGGATAGCCGTTGAATTGCAAGC
tataagtttttcacccgattattgaattttaaggcaaaccttggatctccaacagAACGTTCGTCTTACTGTCGAGCTATTAGTGGATAGCCGTTGAATTGCAAGCTCTTGGGACGAATTGGGATGGAGAACCAAGAG
tctcc CT-rich tract
attattgaattttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatctgatactctcatgtcctcttttttcttaccatatccgcttttataagtttttcacccgattattgaattttaaggcaaaccttggatctccaacagAACGTTCGTCTTACTGTCGAGCTATTAGTGGATAGCCGTTGAATTGCAAGCTCTTGGGACGAATTGGGATGGAGAACCAAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA