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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaaagcaggacgaccctgcgtgctgggatagctacgactgagttgacgggagtgattgtgtgtttctaactcgttgccttgttttgtttttgccgcagATATACATCAAATTTGTATTTTCCACGCAGTAAATTACTTTGAGCAAGCGATTATCAGAGAATTTTTGAGGTTGCAGTAGTAGCATCCAATGTTCAACTC

Basic information

species Physcomitrella patens
transcript PP1S76_82V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100437389|gb|BY961494.1|BY961494
EST:     AGTCGTTCGATCTGTTGGGGCCTTTCCACTCACGAGGGCTTCTCTTCAAG                         ATATACATCAAATTTGTATTTTCCACGCAGTAAATTACTTTGAGCAAGCGA
genomic: AGTCGTTCGATCTGTTGGGGCCTTTCCACTCACGAGGGCTTCTCTTCAAGgtctgataat ... tttgccgcagATATACATCAAATTTGTATTTTCCACGCAGTAAATTACTTTGAGCAAGCGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgacgggagtgattgtgtgtttctaactcgttgccttgttttgtttttgccgcagATATACATCAAATTTGTATTTTCCACGCAGTAAATTACTTTGAGCAAGCGATTATCAGAGAATTTTTGAGGTTGCAGTAGTAGCATCCAATGTTCAACTC
                    ttctaac  putative branch site (score: 1)
 ccttgttttgttttt  putative PPT
 ttttgttttt  TA-rich tract