Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagagtctctcccccttctcttccagtgcacgttttaggagttttaccccgcatcgaagctttttacggtgaattgaatgcaagggatgaggcgttattatggaccaatcgagagttgatgtctggattgagctttgcgttgttttgtgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG

Basic information

species Physcomitrella patens
transcript PP1S76_47V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37826981|gb|BJ584993.1|BJ584993
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|18368465|gb|BJ200550.1|BJ200550
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162158517|gb|FC334520.1|FC334520
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162241774|gb|FC417301.1|FC417301
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|37844877|gb|BJ602885.1|BJ602885
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162254004|gb|FC430638.1|FC430638
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|67572280|gb|BJ945104.1|BJ945104
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162250297|gb|FC425951.1|FC425951
EST:     CAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162250298|gb|FC425952.1|FC425952
EST:     CAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|67698108|gb|BJ958341.1|BJ958341
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|37831299|gb|BJ589311.1|BJ589311
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|18351969|gb|BJ184021.1|BJ184021
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|67699358|gb|BJ959591.1|BJ959591
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162218513|gb|FC395090.1|FC395090
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162230026|gb|FC405966.1|FC405966
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162229887|gb|FC404340.1|FC404340
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162272151|gb|FC447945.1|FC447945
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162272150|gb|FC447944.1|FC447944
EST:     CCACTGTTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162199717|gb|FC375956.1|FC375956
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162206524|gb|FC382893.1|FC382893
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|67695648|gb|BJ955881.1|BJ955881
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|18360386|gb|BJ192448.1|BJ192448
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|18325041|gb|BJ157037.1|BJ157037
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|37838526|gb|BJ596534.1|BJ596534
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|67574690|gb|BJ947514.1|BJ947514
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162262257|gb|FC437168.1|FC437168
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|18360864|gb|BJ192927.1|BJ192927
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162206500|gb|FC382869.1|FC382869
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162206116|gb|FC383109.1|FC383109
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|67575874|gb|BJ948698.1|BJ948698
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162220744|gb|FC395513.1|FC395513
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162241775|gb|FC417302.1|FC417302
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|15320128|gb|BI487719.1|BI487719
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|37849823|gb|BJ607831.1|BJ607831
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162241864|gb|FC418119.1|FC418119
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162240244|gb|FC415966.1|FC415966
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|18374313|gb|BJ205891.1|BJ205891
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|37838753|gb|BJ596761.1|BJ596761
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162265356|gb|FC440474.1|FC440474
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|22492578|gb|BU052501.1|BU052501
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|22132566|gb|BQ827229.1|BQ827229
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|67703168|gb|BJ963401.1|BJ963401
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162269168|gb|FC445036.1|FC445036
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|162215229|gb|FC391634.1|FC391634
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
EST: gi|67578429|gb|BJ950596.1|BJ950596
EST:     CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTG                         GTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT
genomic: CCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 54

TGTGTGGGGTGGGGTGACACCATGGTGCAGCGTTTGACCTACAGGCGGCGCCACTGCTATGCCACCAAATCCAACCAGACTCGTGTGGTCAAGACCCCTGgtgagagtct ... tgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccaatcgagagttgatgtctggattgagctttgcgttgttttgtgggatatagGTGGTAAGAATGTATTTCAAACCGCCACAAAGAGGGCTCGAGGACCTAAGTGTCCAGTAACTGGGAAGCGCATTGCTGGG
           agttgat  putative branch site (score: 54)
                                     ttgtttt  TA-rich tract