1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aaaacctagaagtctgaacaggtcaatttcgaaatcgaaccagcgagttgtgaacgttaatgtatgtcttaacaagatgacttctaatattgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGGAAAATCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATT
species | Physcomitrella patens |
transcript | PP1S76_197V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAG GGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCEST: gi|162243142|gb|FC416742.1|FC416742
genomic: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAGgtttggaaga ... tgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGC
EST: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAG GGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGEST: gi|162181631|gb|FC357933.1|FC357933
genomic: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAGgtttggaaga ... tgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTG
EST: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAG GGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGEST: gi|162154850|gb|FC331892.1|FC331892
genomic: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAGgtttggaaga ... tgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTG
EST: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAG GGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGNNNNNNNGGGACTEST: gi|162149984|gb|FC326515.1|FC326515
genomic: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAGgtttggaaga ... tgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCC-GGGACT
EST: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAG GGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGEST: gi|208397729|gb|DC911980.1|DC911980
genomic: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAGgtttggaaga ... tgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTG
EST: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAG GGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGEST: gi|162229090|gb|FC404774.1|FC404774
genomic: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAGgtttggaaga ... tgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTG
EST: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAG GGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGEST: gi|162196819|gb|FC373887.1|FC373887
genomic: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAGgtttggaaga ... tgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTG
EST: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAG GGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTG
genomic: GTTGCAGGAGGCAGTGATCTTGCCCGTGAAGTTTCCCCAATTTTTCACAGgtttggaaga ... tgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTG
agttgtgaacgttaatgtatgtcttaacaagatgacttctaatattgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGGAAAATCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATT
ttctaat putative branch site (score: 17)
ttctaatattgaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacctagaagtctgaacaggtcaatttcgaaatcgaaccagcgagttgtgaacgttaatgtatgtcttaacaagatgacttctaatattgaaatgcagGGAAGCGAAGACCATGGCGAGCATTTTTGTTGTATGGGCCCCCCGGGACTGGAAAATCGTATCTTGCAAAAGCTGTTGCTACGGAAGCTGATTCTACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - -ctgaaca