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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagttttttactctcgcatctctattgagatcctgagaattgaaagatggtaacaagtgcgacgtagaaatgacactgtgggtgctcgttggcgagaaagCCAGGTCAATCAAATCTTATCACTGTCAACAATGGCTCTCGGTCAGGGGTCTGATTGGAAAAAAGACAAG

Basic information

species Physcomitrella patens
transcript PP1S76_186V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18340562|gb|BJ172590.1|BJ172590
EST:     GATTGCAACGATTGAGGAACCCTTGAGTGGAGTATCATAATTCTGTACAT                         CCAGGTCAATCAAATCTTATCACTGTCAACAATGGCTCTCGGTCAGGGGTC
genomic: GATTGCAACGATTGAGGAACCCTTGAGTGGAGTATCATAATTCTGTACATgtgagtgtga ... ggcgagaaagCCAGGTCAATCAAATCTTATCACTGTCAACAATGGCTCTCGGTCAGGGGTC
EST: gi|18332049|gb|BJ164061.1|BJ164061
EST:     GATTGCAACGATTGAGGAACCCTTGAGTGGAGTATCATAATTCTGTACAT                         CCAGGTCAATCAAATCTTATCACTGTCAACAATGGCTCTCGGTCAGGGGTC
genomic: GATTGCAACGATTGAGGAACCCTTGAGTGGAGTATCATAATTCTGTACATgtgagtgtga ... ggcgagaaagCCAGGTCAATCAAATCTTATCACTGTCAACAATGGCTCTCGGTCAGGGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatggtaacaagtgcgacgtagaaatgacactgtgggtgctcgttggcgagaaagCCAGGTCAATCAAATCTTATCACTGTCAACAATGGCTCTCGGTCAGGGGTCTGATTGGAAAAAAGACAAG
  tggtaac  putative branch site (score: 2)
 tagaaat  TA-rich tract