1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gtcaaatgattttacagttgttgatcggatgcctgtatggtgagggttcattgtgctgattaattcttcgcttgtgatcgttgtctgctgaatcgaccagGTGGCGTTCTTTCTTGGATTGATGCCCTTGATAATTTCATGGATCTATGCTGAAATACTGGACTATAAGAAACATCCACCTCTGATCAAAGT
species | Physcomitrella patens |
transcript | PP1S74_21V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTTCCCGTGGAGGGAGTCACAATGGAAGATATTAAAGCTTGCCAG GTGGCGTTCTTTCTTGGATTGATGCCCTTGATAATTTCATGGATCTATGCTEST: gi|100419441|gb|BY957576.1|BY957576
genomic: TGTTCCCGTGGAGGGAGTCACAATGGAAGATATTAAAGCTTGCCAGgtttgtgctt ... aatcgaccagGTGGCGTTCTTTCTTGGATTGATGCCCTTGATAATTTCATGGATCTATGCT
EST: AACGTGTTCCCGTGGAGGGAGTCACAATGGAAGATATTAAAGCTTGCCAG GTGGCGTTCTTTCTTGGATTGATGCCCTTGATAATTTCATGGATCTATGCTEST: gi|18343494|gb|BJ175532.1|BJ175532
genomic: AACGTGTTCCCGTGGAGGGAGTCACAATGGAAGATATTAAAGCTTGCCAGgtttgtgctt ... aatcgaccagGTGGCGTTCTTTCTTGGATTGATGCCCTTGATAATTTCATGGATCTATGCT
EST: AACGTGTTCCCGTGGAGGGAGTCACAATGGAAGATATTAAAGCTTGCCAG GTGGCGTTCTTTCTTGGA
genomic: AACGTGTTCCCGTGGAGGGAGTCACAATGGAAGATATTAAAGCTTGCCAGgtttgtgctt ... aatcgaccagGTGGCGTTCTTTCTTGGA
gttcattgtgctgattaattcttcgcttgtgatcgttgtctgctgaatcgaccagGTGGCGTTCTTTCTTGGATTGATGCCCTTGATAATTTCATGGATCTATGCTGAAATACTGGACTATAAGAAACATCCACCTCTGATCAAAGT
gattaat putative branch site (score: 3)
attaattctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaaatgattttacagttgttgatcggatgcctgtatggtgagggttcattgtgctgattaattcttcgcttgtgatcgttgtctgctgaatcgaccagGTGGCGTTCTTTCTTGGATTGATGCCCTTGATAATTTCATGGATCTATGCTGAAATACTGGACTATAAGAAACATCCACCTCTGATCAAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA