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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatgaaagtttttcgtctctgaggcatctgaataatattattgtgatactttgtttaccaaacgtggctgatatgtacctatgaatgcgggatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGCGGCCAATAAGTTGTCAGATTTCTTAGTTGCTGTGACCAGGGCATTTGGA

Basic information

species Physcomitrella patens
transcript PP1S73_94V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18353205|gb|BJ185260.1|BJ185260
EST:     GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG                         GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: gi|18352162|gb|BJ184216.1|BJ184216
EST:     GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG                         GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: gi|18359587|gb|BJ191648.1|BJ191648
EST:     GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG                         GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: gi|18342920|gb|BJ174956.1|BJ174956
EST:     GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG                         GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: gi|67703887|gb|BJ964120.1|BJ964120
EST:     GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG                         GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
EST: gi|18348107|gb|BJ180154.1|BJ180154
EST:     GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAG                         GAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC
genomic: GTGGCCCTGCACTCTCGCCCTCCGTTGCGAAGGCGGAGCTCCGTGTTCAGgtgagagcgc ... gatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atactttgtttaccaaacgtggctgatatgtacctatgaatgcgggatgtgttagGAGGAGATCATGATTTGCACTGGGGATCGTGGCGGCATGAGAGCAAGTGGCGGCCAATAAGTTGTCAGATTTCTTAGTTGCTGTGACCAGGGCATTTGGA
                    ggctgat  putative branch site (score: 4)
     ttgttta  TA-rich tract