Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gggatagttgtgaaggttctggcctgggtttgatcaacaaacgacgaactggtgttcaacatcgtctgagaaagcactgattggctaggccatctttcagAATGGGAACTACTGCAGTGATGGCCCCTCCAGCCCTTCAGAAAAACCTTGAGTCAGACCAGCCACGGCAAGTAACAAGTGTGATTACTGGGTACCTCTCT

Basic information

species Physcomitrella patens
transcript PP1S73_244V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100441249|gb|BY962538.1|BY962538
EST:     GATCTTCTTGGGTTCTCCTCATTCGGTGCACAACACTGAG                         AATGGGAACTACTGCAGTGATGGCCCCTCCAGCCCTTCAGAAAAACCTTGA
genomic: GATCTTCTTGGGTTCTCCTCATTCGGTGCACAACACTGAGgtattcgtct ... catctttcagAATGGGAACTACTGCAGTGATGGCCCCTCCAGCCCTTCAGAAAAACCTTGA
EST: gi|100445006|gb|BY982833.1|BY982833
EST:     ATCTTCTTGGGTTCTCCTCATTCGGTGCACAACACTGAG                         AATGGGAACTACTGCAGTGATGGCCCCTCCAGCCCTTCAGAAAAACCTTGA
genomic: ATCTTCTTGGGTTCTCCTCATTCGGTGCACAACACTGAGgtattcgtct ... catctttcagAATGGGAACTACTGCAGTGATGGCCCCTCCAGCCCTTCAGAAAAACCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaactggtgttcaacatcgtctgagaaagcactgattggctaggccatctttcagAATGGGAACTACTGCAGTGATGGCCCCTCCAGCCCTTCAGAAAAACCTTGAGTCAGACCAGCCACGGCAAGTAACAAGTGTGATTACTGGGTACCTCTCT
                             cactgat  putative branch site (score: 3)
                                            ccatctttc  putative PPT