1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcgcacctttcttttgaacacatcctgagggggcatgtttttaaaagtgatcatgtttgagtggcgaagctaattctcagttttgccttcaacggagcagGTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAG
species | Physcomitrella patens |
transcript | PP1S70_254V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGAGCGTAACCAGGATGCGACCGCTTACGTCGGCAACCTCGACTCTCAG GTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAGEST: gi|162152540|gb|FC328818.1|FC328818
genomic: CTGAGCGTAACCAGGATGCGACCGCTTACGTCGGCAACCTCGACTCTCAGgtgtctgtct ... aacggagcagGTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAG
EST: CTGAGCGTAACCAGGATGCGACCGCTTACGTCGGCAACCTCGACTCTCAG GTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAGEST: gi|208375791|gb|DC936731.1|DC936731
genomic: CTGAGCGTAACCAGGATGCGACCGCTTACGTCGGCAACCTCGACTCTCAGgtgtctgtct ... aacggagcagGTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAG
EST: CTGAGCGTAACCAGGATGCGACCGCTTACGTCGGCAACCTCGACTCTCAG GTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAGEST: gi|208357964|gb|DC938835.1|DC938835
genomic: CTGAGCGTAACCAGGATGCGACCGCTTACGTCGGCAACCTCGACTCTCAGgtgtctgtct ... aacggagcagGTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAG
EST: CTGAGCGTAACCAGGATGCGACCGCTTACGTCGGCAACCTCGACTCTCAG GTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAG
genomic: CTGAGCGTAACCAGGATGCGACCGCTTACGTCGGCAACCTCGACTCTCAGgtgtctgtct ... aacggagcagGTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAG
agtgatcatgtttgagtggcgaagctaattctcagttttgccttcaacggagcagGTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAG
agctaat putative branch site (score: 11)
taattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgcacctttcttttgaacacatcctgagggggcatgtttttaaaagtgatcatgtttgagtggcgaagctaattctcagttttgccttcaacggagcagGTTTCGGAAGAGTTGTTGTGGGAGTTGTTCGTGCAGGCTGGACCCGTAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - cacatcc