Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agaatctttagcattttcaatgcacgccgagttcgtgacttgcttactagagattgtaaaagtacctctaagctgctgtgtttctgcgatgtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCATCGTCCATCATCCTGACAATACGCCTTTGTTTCGACTTGTAGAGGTTTCA

Basic information

species Physcomitrella patens
transcript PP1S70_177V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208374356|gb|DC940685.1|DC940685
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|18367429|gb|BJ199512.1|BJ199512
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100385663|gb|BY987728.1|BY987728
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100391048|gb|BY953058.1|BY953058
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|208388770|gb|DC941779.1|DC941779
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|18326068|gb|BJ158067.1|BJ158067
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67718135|gb|BJ968394.1|BJ968394
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACNAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|18353600|gb|BJ185655.1|BJ185655
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|208345393|gb|DC912982.1|DC912982
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|18375457|gb|BJ207035.1|BJ207035
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100407950|gb|BY955849.1|BY955849
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67717439|gb|BJ967698.1|BJ967698
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100431940|gb|BY978583.1|BY978583
EST:     GGGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67704586|gb|BJ964819.1|BJ964819
EST:     CTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: CTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67717731|gb|BJ967990.1|BJ967990
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67717022|gb|BJ967281.1|BJ967281
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100452922|gb|CJ975511.1|CJ975511
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100371240|gb|BY986007.1|BY986007
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100384734|gb|BY950724.1|BY950724
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|162178970|gb|FC354278.1|FC354278
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100383976|gb|BY987233.1|BY987233
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67704062|gb|BJ964295.1|BJ964295
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAGAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67709573|gb|BJ965389.1|BJ965389
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|18369412|gb|BJ201499.1|BJ201499
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100384993|gb|BY969728.1|BY969728
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100418271|gb|BY993417.1|BY993417
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|18328867|gb|BJ160873.1|BJ160873
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100412625|gb|BY974827.1|BY974827
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67719789|gb|BJ970048.1|BJ970048
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|208384646|gb|DC915235.1|DC915235
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|162172494|gb|FC348539.1|FC348539
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100406364|gb|BY955590.1|BY955590
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67709709|gb|BJ965525.1|BJ965525
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCNAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|162174714|gb|FC351402.1|FC351402
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100390657|gb|BY971412.1|BY971412
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67704149|gb|BJ964382.1|BJ964382
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|18359029|gb|BJ191089.1|BJ191089
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100422830|gb|BY958022.1|BY958022
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|100399707|gb|BY972852.1|BY972852
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|18354690|gb|BJ186748.1|BJ186748
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67719799|gb|BJ970058.1|BJ970058
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|67701737|gb|BJ961970.1|BJ961970
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|208377218|gb|DC932368.1|DC932368
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
EST: gi|162172327|gb|FC348268.1|FC348268
EST:     GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAG                         ATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT
genomic: GAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 15

CTTCCTGAGCGAGGAGGACGAGATCGCGAGGGTTGTAGTGGAGTAACTTGGAGCTTGCATCGAGGGAGAGATAGTCTTCGGTGGCTTGGTGCTTTGCGAGgtgagcgtcg ... gtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCATCGTCCATCATCCTGACAATACGCCTTTGTTTCGACTTGTAGAGGTTTCA




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actagagattgtaaaagtacctctaagctgctgtgtttctgcgatgtatctgcagATCCTGTGTAGCGTCGAAAACGAACAGAGGAATTGGCGTGACCTACAGCATCGTCCATCATCCTGACAATACGCCTTTGTTTCGACTTGTAGAGGTTTCA
 tgcttac  putative branch site (score: 15)
       attgtaaaa  TA-rich tract