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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgactttgaattcaactcagctttgtcgagtgctatcatgatgataggttaagagaatattatgctgacgctaatattgtttcgttcacaattttcttctaacggagtgttgtgatctacagGAACGGCGCTGTGAAACCAGCCATCAAAGCGTACCCGAAAGCGCTCAAATACAAGCAGAACTTCGTTATCACTTTTGGAATAGGCCGAAGGGTGGGCGGA

Basic information

species Physcomitrella patens
transcript PP1S70_122V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162235180|gb|FC411263.1|FC411263
EST:     ACCCTACCTGGCCGGCGG                         GAACGGCGCTGTGAAACCAGCCATCATAGCGTACCCGAAAGCGCTCAAATA
genomic: ACCCTACCTGGCCGGCGGgtatgacttt ... tgatctacagGAACGGCGCTGTGAAACCAGCCATCAAAGCGTACCCGAAAGCGCTCAAATA
EST: gi|162235181|gb|FC411264.1|FC411264
EST:     CCTACTGAACTGCGAGTGGAGGCCTTTTCTCCACCCTACCTGGCCGGCGG                         GAACGGCGCTGTGAAACCAGCCATCANAGCGTACCCGAAAGCGCTCAAATA
genomic: CCTACTGAACTGCGAGTGGAGGCCTTTTCTCCACCCTACCTGGCCGGCGGgtatgacttt ... tgatctacagGAACGGCGCTGTGAAACCAGCCATCAAAGCGTACCCGAAAGCGCTCAAATA
EST: gi|18325404|gb|BJ157400.1|BJ157400
EST:     CCTACTGAACTGCGAGTGGAGGCCTTTTCTCCACCCTACCTGGCCGGCGG                         GAACGGCGCTGTGAAACCAGCCATCAAAGCGTACCCGAAAGCGCTCAAATA
genomic: CCTACTGAACTGCGAGTGGAGGCCTTTTCTCCACCCTACCTGGCCGGCGGgtatgacttt ... tgatctacagGAACGGCGCTGTGAAACCAGCCATCAAAGCGTACCCGAAAGCGCTCAAATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acgctaatattgtttcgttcacaattttcttctaacggagtgttgtgatctacagGAACGGCGCTGTGAAACCAGCCATCAAAGCGTACCCGAAAGCGCTCAAATACAAGCAGAACTTCGTTATCACTTTTGGAATAGGCCGAAGGGTGGGCGGA
                             ttctaac  putative branch site (score: 1)
     aatattgttt  TA-rich tract