1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaacagggaatagtattttcctgtctacttcctttctgagtgatgcattagtcaattatctatctcttctaacatgctcatgatcgcgtggaaatggcagGTATCGAGGCAGTGACCGCCTTCAAGTACACATCTCTGATGCTGATTCAAAACGCTACGAAGTCCCCCAGGAGCTGCTTCCAAGGGACCCTGTGGATAGT
species | Physcomitrella patens |
transcript | PP1S6_50V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCTACTGAGACTTATGGCGCTGATGTCAAGAATCTTAAACTTGTAGCAAG GTATCGAGGCAGTGACCGCCTTCAAGTACACATCTCTGATGCTGATTCAAAEST: gi|18372273|gb|BJ203875.1|BJ203875
genomic: GCTACTGAGACTTATGGCGCTGATGTCAAGAATCTTAAACTTGTAGCAAGgtaagctcac ... gaaatggcagGTATCGAGGCAGTGACCGCCTTCAAGTACACATCTCTGATGCTGATTCAAA
EST: GCTACTGAGACTTATGGCGCTGATGTCAAGAATCTTAAACTTGTAGCAAG GTATCGAGGCAGTGACCGCCTTCAAGTACACATCTCTGATGCTGATTCAAAEST: gi|18371647|gb|BJ203249.1|BJ203249
genomic: GCTACTGAGACTTATGGCGCTGATGTCAAGAATCTTAAACTTGTAGCAAGgtaagctcac ... gaaatggcagGTATCGAGGCAGTGACCGCCTTCAAGTACACATCTCTGATGCTGATTCAAA
EST: GCTACTGAGACTTATGGCGCTGATGTCAAGAATCTTAAACTTGTAGCAAG GTATCGAGGCAGTGACCGCCTTCAAGTACACATCTCTGATGCTGATTCAAA
genomic: GCTACTGAGACTTATGGCGCTGATGTCAAGAATCTTAAACTTGTAGCAAGgtaagctcac ... gaaatggcagGTATCGAGGCAGTGACCGCCTTCAAGTACACATCTCTGATGCTGATTCAAA
cattagtcaattatctatctcttctaacatgctcatgatcgcgtggaaatggcagGTATCGAGGCAGTGACCGCCTTCAAGTACACATCTCTGATGCTGATTCAAAACGCTACGAAGTCCCCCAGGAGCTGCTTCCAAGGGACCCTGTGGATAGT
ttctaac putative branch site (score: 10)
aattatctat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacagggaatagtattttcctgtctacttcctttctgagtgatgcattagtcaattatctatctcttctaacatgctcatgatcgcgtggaaatggcagGTATCGAGGCAGTGACCGCCTTCAAGTACACATCTCTGATGCTGATTCAAAACGCTACGAAGTCCCCCAGGAGCTGCTTCCAAGGGACCCTGTGGATAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacatgc