1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgtctgcgttttgagacatttagtacatttaggtgtttacattgtactaccaaatctttgtcagttttggtgacttgtagtcttcacttgttgatgcagGGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAAG
species | Physcomitrella patens |
transcript | PP1S6_413V6.3 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAG GGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAAEST: gi|162223141|gb|FC398771.1|FC398771
genomic: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAGgtgaatcacc ... gttgatgcagGGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAA
EST: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAG GGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAAEST: gi|100415671|gb|BY992947.1|BY992947
genomic: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAGgtgaatcacc ... gttgatgcagGGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAA
EST: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAG GGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAAEST: gi|100392816|gb|BY971897.1|BY971897
genomic: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAGgtgaatcacc ... gttgatgcagGGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAA
EST: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAG GGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAAEST: gi|100445934|gb|CJ970233.1|CJ970233
genomic: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAGgtgaatcacc ... gttgatgcagGGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAA
EST: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAG GGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAA
genomic: GAGGAGGATACATCCCCATCGAGATCTCTCAGCAGTTCTCCCACACACAGgtgaatcacc ... gttgatgcagGGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAA
tactaccaaatctttgtcagttttggtgacttgtagtcttcacttgttgatgcagGGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAAG
tgttgat putative branch site (score: 4)
aaatcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtctgcgttttgagacatttagtacatttaggtgtttacattgtactaccaaatctttgtcagttttggtgacttgtagtcttcacttgttgatgcagGGGTGGCATTGAAGGTTTTTCCGGTCCCGCAGAAGTCACAGTAGAGAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT