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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tctgagctttgattaccccctaagaccgaatctcgtccgcatttagattttctaacttaacgctcgtgttcgtgttcgtgttcgtgttttaatttttcagTATTGTTGCTCGACGTGCTGAAGTTTGCACATTACCAGAGGTAGTGTGGCGAGGAACAAGTTTTGTGGTGTGTGTGTTTCTTGGGTACCCATTTTGAGCT

Basic information

species Physcomitrella patens
transcript PP1S6_413V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228384|gb|FC405230.1|FC405230
EST:     GTTTTGACCAGCGCTCGTGTTGAGTTCGTTGCAAGTGCCGAAATTATCTG                         TATTGTTGCTCGACGTGCTGAAGTTTGCACATTACCAGAGGTAGTGTGGCG
genomic: GTTTTGACCAGCGCTCGTGTTGAGTTCGTTGCAAGTGCCGAAATTATCTGgtgggtttac ... aatttttcagTATTGTTGCTCGACGTGCTGAAGTTTGCACATTACCAGAGGTAGTGTGGCG
EST: gi|100390952|gb|BY989435.1|BY989435
EST:     GTTTTGACCAGCGCTCGTGTTGAGTTCGTTGCAAGTGCCGAAATTATCTG                         TATTGTTGCTCGACGTGCTGAAGTTTGCACATTACCAGAGGTAGTGTGGCG
genomic: GTTTTGACCAGCGCTCGTGTTGAGTTCGTTGCAAGTGCCGAAATTATCTGgtgggtttac ... aatttttcagTATTGTTGCTCGACGTGCTGAAGTTTGCACATTACCAGAGGTAGTGTGGCG
EST: gi|208357877|gb|DC902359.1|DC902359
EST:     GTTTTGACCAGCGCTCGTGTTGAGTTCGTTGCAAGTGCCGAAATTATCTG                         TATTGTTGCTCGACGTGCTGAAGTTTGCACATTACCAGAGGTAGTGTGGCG
genomic: GTTTTGACCAGCGCTCGTGTTGAGTTCGTTGCAAGTGCCGAAATTATCTGgtgggtttac ... aatttttcagTATTGTTGCTCGACGTGCTGAAGTTTGCACATTACCAGAGGTAGTGTGGCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttctaacttaacgctcgtgttcgtgttcgtgttcgtgttttaatttttcagTATTGTTGCTCGACGTGCTGAAGTTTGCACATTACCAGAGGTAGTGTGGCGAGGAACAAGTTTTGTGGTGTGTGTGTTTCTTGGGTACCCATTTTGAGCT
                                               tttttc  CT-rich tract
                                       tgttttaatttttca  TA-rich tract