1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgggatatgacactgaatcgtagcgtcaatagcttgcagtggtttgttttgggcatggcgcaatgtatgcatcttgacaataagacgggctcctgtgcagGAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTATCACCTTGCAGCAAATATACACCATGTACCACGGAGAAGATGCTCGGTC
species | Physcomitrella patens |
transcript | PP1S6_371V6.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGCGAGAGTTCGAAGCGTTTGTGCTGGATGCAGACACTGCCATAAG GAGGAAGTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTAEST: gi|100410762|gb|BY956176.1|BY956176
genomic: ATCAAGCGAGAGTTCGAAGCGTTTGTGCTGGATGCAGACACTGCCATAAGgtcgaaccca ... tcctgtgcagGAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTA
EST: ATCAAGCGAGAGTTCGAAGCGTTTGTGCTGGATGCAGACACTGCCATAAG GAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTAEST: gi|100389287|gb|BY971037.1|BY971037
genomic: ATCAAGCGAGAGTTCGAAGCGTTTGTGCTGGATGCAGACACTGCCATAAGgtcgaaccca ... tcctgtgcagGAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTA
EST: ATCAAGCGAGAGTTCGAAGCGTTTGTGCTGGATGCAGACACTGCCATAAG GAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTAEST: gi|208371541|gb|DC936262.1|DC936262
genomic: ATCAAGCGAGAGTTCGAAGCGTTTGTGCTGGATGCAGACACTGCCATAAGgtcgaaccca ... tcctgtgcagGAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTA
EST: ATCAAGCGAGAGTTCGAAGCGTTTGTGCTGGATGCAGACACTGCCATAAG GAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTA
genomic: ATCAAGCGAGAGTTCGAAGCGTTTGTGCTGGATGCAGACACTGCCATAAGgtcgaaccca ... tcctgtgcagGAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTA
gttttgggcatggcgcaatgtatgcatcttgacaataagacgggctcctgtgcagGAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTATCACCTTGCAGCAAATATACACCATGTACCACGGAGAAGATGCTCGGTC
tcttgac putative branch site (score: 36)
ctcctgt putative PPT
aatgtat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggatatgacactgaatcgtagcgtcaatagcttgcagtggtttgttttgggcatggcgcaatgtatgcatcttgacaataagacgggctcctgtgcagGAGGAATTCAGACAGAAGTTAGGAGCCATTCGTTTGAATTTGCGTGTGGTATCACCTTGCAGCAAATATACACCATGTACCACGGAGAAGATGCTCGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG