1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttttggaactgaacagttcattcctacaactgaggtttgtagacgatataactgcgagttgcttgtggaatgcttcgctgatgaatgtggttctttgcagGCAGAAGAGCAATATGCGCATCCGGGGATATGCCTGTTCACAGTGCTGTTTAAG
species | Physcomitrella patens |
transcript | PP1S6_365V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCTGGAACGAGCGTCAACACCTCCACTGCCATTGCTCCTGCCACCATG GCAGAAGAGCAATATGCGCATCCGGGGATATGCCTGTTCACAGTGCTGTTTEST: gi|208398129|gb|DC908358.1|DC908358
genomic: GAGCTGGAACGAGCGTCAACACCTCCACTGCCATTGCTCCTGCCACCATGgcgagttcat ... ttctttgcagGCAGAAGAGCAATATGCGCATCCGGGGATATGCCTGTTCACAGTGCTGTTT
EST: GAGCTGGAACGAGCGTCAACACCTCCACTGCCATTGCTCCTGCCACCATG GCAGAAGAGCAATATGCGCATCCGGGGATATGCCTGTTCACAGTGCTGTTTEST: gi|18344360|gb|BJ176400.1|BJ176400
genomic: GAGCTGGAACGAGCGTCAACACCTCCACTGCCATTGCTCCTGCCACCATGgcgagttcat ... ttctttgcagGCAGAAGAGCAATATGCGCATCCGGGGATATGCCTGTTCACAGTGCTGTTT
EST: GAGCTGGAACGAGCGTCAACACCTCCACTGCCATTGCTCCTGCCACCATG GCAGAAGAGCAATATGCGCATCCGGGGATATGCCTGTTCACAGTGCTGTTT
genomic: GAGCTGGAACGAGCGTCAACACCTCCACTGCCATTGCTCCTGCCACCATGgcgagttcat ... ttctttgcagGCAGAAGAGCAATATGCGCATCCGGGGATATGCCTGTTCACAGTGCTGTTT
atataactgcgagttgcttgtggaatgcttcgctgatgaatgtggttctttgcagGCAGAAGAGCAATATGCGCATCCGGGGATATGCCTGTTCACAGTGCTGTTTAAG
ttctttgc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttggaactgaacagttcattcctacaactgaggtttgtagacgatataactgcgagttgcttgtggaatgcttcgctgatgaatgtggttctttgcagGCAGAAGAGCAATATGCGCATCCGGGGATATGCCTGTTCACAGTGCTGTTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - ctgaaca