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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aagctcgtgcaacaaattttaagagcgaaattagcacgttggattgttgcttgtaggaattgaactgactaaataagtcatcggctgtgtgtttgtatagATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCTCTGCGTGCGAATGGCACCAAGGGACCCTGCTTACAAACACTTCTACAGG

Basic information

species Physcomitrella patens
transcript PP1S6_359V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100397446|gb|BY972503.1|BY972503
EST:     GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCAT                         ATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
genomic: GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCATgtatgttctc ... gtttgtatagATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
EST: gi|18360397|gb|BJ192459.1|BJ192459
EST:     GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCAT                         ATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
genomic: GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCATgtatgttctc ... gtttgtatagATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
EST: gi|162273547|gb|FC449692.1|FC449692
EST:     GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCAT                         ATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
genomic: GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCATgtatgttctc ... gtttgtatagATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
EST: gi|67571549|gb|BJ944373.1|BJ944373
EST:     GGACTGTTGCTTCGACTTGCAGATATTTCTTTCGGTTTTCCCTGGCGCAT                         ATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
genomic: GGACTGTTGCTTCGACTTGCAG-TATTTCTTTCGGTTTTCCCTGGCGCATgtatgttctc ... gtttgtatagATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
EST: gi|100391315|gb|BY971595.1|BY971595
EST:     GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCAT                         ATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
genomic: GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCATgtatgttctc ... gtttgtatagATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
EST: gi|100379737|gb|BY949919.1|BY949919
EST:     GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCAT                         ATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT
genomic: GGGACTGTTGCTTCGACTTGCAGTATTTCTTTCGGTTTTCCCTGGCGCATgtatgttctc ... gtttgtatagATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgcttgtaggaattgaactgactaaataagtcatcggctgtgtgtttgtatagATGTCGATGGAGCAACCCGTGAATTTGGGGATGGTAGACCTCTACCGCTCTCTGCGTGCGAATGGCACCAAGGGACCCTGCTTACAAACACTTCTACAGG
                     gactaaa  putative branch site (score: 2)
                      actaaataa  TA-rich tract