1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatgcagagggttaggatacgggattgttggtgtggcattgcgggattgctaggtgatgcaagtggcagtgtatgatacaccggtgttggggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA
species | Physcomitrella patens |
transcript | PP1S6_313V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACG GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGAEST: gi|208363096|gb|DC958009.1|DC958009
genomic: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
EST: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACG GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGAEST: gi|162246281|gb|FC423639.1|FC423639
genomic: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
EST: AATGAGGAGCTGGCCAAGTGGTACG TTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGAEST: gi|208359085|gb|DC957833.1|DC957833
genomic: AATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
EST: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACN GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGAEST: gi|162271665|gb|FC448590.1|FC448590
genomic: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
EST: GTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACG GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGAEST: gi|162231613|gb|FC408232.1|FC408232
genomic: GTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
EST: AGCAATGAGGAGCTGGCCAAGTGGTACG GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGAEST: gi|162233003|gb|FC408410.1|FC408410
genomic: AGCAATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
EST: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACG GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGAEST: gi|208366912|gb|DC951399.1|DC951399
genomic: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
EST: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACG GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCNTTTGGCGAAGGACGAGAEST: gi|162194119|gb|FC369462.1|FC369462
genomic: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
EST: GTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACG GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGAEST: gi|208380204|gb|DC927483.1|DC927483
genomic: GTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
EST: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACG GTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
genomic: GAGCGTGAAGGTGAATGTCCCCAGCAATGAGGAGCTGGCCAAGTGGTACGgtaagtaatt ... ggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGA
attgctaggtgatgcaagtggcagtgtatgatacaccggtgttggggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA
tatgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatgcagagggttaggatacgggattgttggtgtggcattgcgggattgctaggtgatgcaagtggcagtgtatgatacaccggtgttggggtaatgcagGTCCGGATAGGAGGATCTACCTGCCCGAGGGCCTTTTGGCGAAGGACGAGATCCCCGAGTACCTGACCGGAGAGGTCCCCGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG