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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttttccaatcagaaaggagtcgtgcaagtggcgcgaacacaggttttgggcttctgaaggagtatcttgcttatcttgtcaacatccttgattgtgcagTGGAATCTACAGCATGCCAGAGAGGGATGGCTTAAAATATCATGATGCGGTGAATGAGATTTCGGATAAGTTCTTTAGCTCGTACAGACGATAACTCGAA

Basic information

species Physcomitrella patens
transcript PP1S6_134V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162261786|gb|FC437075.1|FC437075
EST:     AGCGTGCCGTGAAGTAGCTGCGTGGATTCGATGTCTCCCCCGGTTTGAAG                         TGGAATCTACAGCATGCCAGAGAGGGATGGCTTAAAATATCATGATGCGGT
genomic: AGCGTGCCGTGAAGTAGCTGCGTGGATTCGATGTCTCCCCCGGTTTGAAGgtgagaattc ... gattgtgcagTGGAATCTACAGCATGCCAGAGAGGGATGGCTTAAAATATCATGATGCGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgggcttctgaaggagtatcttgcttatcttgtcaacatccttgattgtgcagTGGAATCTACAGCATGCCAGAGAGGGATGGCTTAAAATATCATGATGCGGTGAATGAGATTTCGGATAAGTTCTTTAGCTCGTACAGACGATAACTCGAA
                                         ccttgat  putative branch site (score: 5)
                          ttatctt  TA-rich tract