1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...attcatttgtgtatgataatttactttgagctgctgtagaggacctgcatcggatgtgacagaagttcgccactaatcatctgcatttctctggcttcagATTAGTGTTGAGTTTCCAGGTTTGGAGAATATTTTGGAGAGAGCCGCCATGCCTGATAGGACCATAATTTTGACAACGTTAAATCAAGCATGGGCGCAAC
species | Physcomitrella patens |
transcript | PP1S69_44V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGTATGCGTGCCAAGACGATTGGTAGTGATGAACTTTAGTGGAGCAGGG ATTAGTGTTGAGTTTCCAGGTTTGGAGAATATTTTGGAGAGAGCCCGC-AT
genomic: ATGTATGCGTGCCAAGACGATTGGTAGTGATGAACTTTAGTGGAGCAGGGgtgagtgctg ... ctggcttcagATTAGTGTTGAGTTTCCAGGTTTGGAGAATATTTTGGAGAGAGCC-GCCAT
tgcatcggatgtgacagaagttcgccactaatcatctgcatttctctggcttcagATTAGTGTTGAGTTTCCAGGTTTGGAGAATATTTTGGAGAGAGCCGCCATGCCTGATAGGACCATAATTTTGACAACGTTAAATCAAGCATGGGCGCAAC
cactaat putative branch site (score: 2)
catttctct putative PPT
taatcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcatttgtgtatgataatttactttgagctgctgtagaggacctgcatcggatgtgacagaagttcgccactaatcatctgcatttctctggcttcagATTAGTGTTGAGTTTCCAGGTTTGGAGAATATTTTGGAGAGAGCCGCCATGCCTGATAGGACCATAATTTTGACAACGTTAAATCAAGCATGGGCGCAAC
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