1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cttgttattgatgctctcaatatactaactataaattcatggtttcctgaagctgtaaaatgatttaagttgctcataatgatgaaattaatttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATCAGCGAAAGCCTCATCATCGCAGCCCACCTGAATATGTTTCTCTGGAAA
species | Physcomitrella patens |
transcript | PP1S69_28V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|100407256|gb|BY974081.1|BY974081
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|162233761|gb|FC410027.1|FC410027
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|162187912|gb|FC364486.1|FC364486
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|162233762|gb|FC410028.1|FC410028
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|18347088|gb|BJ179134.1|BJ179134
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|208364633|gb|DC935418.1|DC935418
genomic: CTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGG-TATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|100383677|gb|BY969206.1|BY969206
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|100388684|gb|BY970832.1|BY970832
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|208344591|gb|DC909150.1|DC909150
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|100405835|gb|BY973878.1|BY973878
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATEST: gi|162265235|gb|FC440158.1|FC440158
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
EST: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAG GTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
genomic: CCTTTGAGAGGGTTGCGTGAAGGGACGCGGAGGGCGACATGGGTATTGAGgtctgttttc ... atttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGAT
cctgaagctgtaaaatgatttaagttgctcataatgatgaaattaatttttgtagGTGCATAGACCACCCATGGAAGCGTGGTACATGGACGATTCAGCGGATGATCAGCGAAAGCCTCATCATCGCAGCCCACCTGAATATGTTTCTCTGGAAA
aattaat putative branch site (score: 45)
tttttgt CT-rich tract
ataatgatgaaattaa TA-rich tract