Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15320106|gb|BI487662.1|BI487662EST: GGATGGGGCAGGCTATCCCTAGCACCCATTAGATTCTCCACTTCTCAACG GTACCAGGTGGTATTTGAATTGGTTAGGTTAAAACTGAGAATACCATTATT
genomic: GGATGGGGCAGGCTATCCCTAGCACCCATTAGATTCTCCACTTCTCAACGgtatgttcct ... gttcctgcagGTACCAGGTGGTATTTGAATTGGTTAGGTTAAAACTGAGAATACCATTATT
EST:
gi|18351398|gb|BJ183450.1|BJ183450EST: GGATGGGGCAGGCTATCCCTAGCACCCATTAGATTCTCCACTTCTCAACG GTACCAGGTGGTATTTGAATTGGTTAGGTTAAAACTGAGAATACCATTATT
genomic: GGATGGGGCAGGCTATCCCTAGCACCCATTAGATTCTCCACTTCTCAACGgtatgttcct ... gttcctgcagGTACCAGGTGGTATTTGAATTGGTTAGGTTAAAACTGAGAATACCATTATT
EST:
gi|37830749|gb|BJ588761.1|BJ588761EST: GGATGGGGCAGGCTATCCCTAGCACCCATTAGATTCTCCACTTCTCAACG GTACCAGGTGGTATTTGAATTGGTTAGGTTAAAACTGAGAATACCATTATT
genomic: GGATGGGGCAGGCTATCCCTAGCACCCATTAGATTCTCCACTTCTCAACGgtatgttcct ... gttcctgcagGTACCAGGTGGTATTTGAATTGGTTAGGTTAAAACTGAGAATACCATTATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtcttcgtcggctaaacattcagggaaaattgatgtgcattgtgttcctgcagGTACCAGGTGGTATTTGAATTGGTTAGGTTAAAACTGAGAATACCATTATTACTGCTTTACTGGTCGCTTGGAAGCTACTTACTTAAACAGGGGTAGGAC
tgttcct CT-rich tract
aaaattgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tactgtatctggaatcactattgaaagactttcttcaaccctagattgtcttcgtcggctaaacattcagggaaaattgatgtgcattgtgttcctgcagGTACCAGGTGGTATTTGAATTGGTTAGGTTAAAACTGAGAATACCATTATTACTGCTTTACTGGTCGCTTGGAAGCTACTTACTTAAACAGGGGTAGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG