Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgcgtacctacttttctccgcctcggcaatgtcttggttatacatctttgcgtttctccattacattattctcagaactgagtgtagcaagtagggtgcatagttgcgtatgaaattgcaaccagattgttctgcatcctgactctcttctcgaactgcgtcgatggaaccgcaatggcgaagACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCATGTCCATGTGACCGCGGTGTCAGCCAACCTGCATGACTTGCTCGTACTGC

Basic information

species Physcomitrella patens
transcript PP1S69_151V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208389933|gb|DC937764.1|DC937764
EST:     AACGGATTTCATACGTCGGGCACTCTCCT-CCCCCGTCTCTGTATCTCAG                         ACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
genomic: AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAGgtgcgtacct ... aatggcgaagACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
EST: gi|100355629|gb|BY946030.1|BY946030
EST:     AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAG                         ACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
genomic: AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAGgtgcgtacct ... aatggcgaagACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
EST: gi|18371864|gb|BJ203466.1|BJ203466
EST:     AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAG                         ACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
genomic: AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAGgtgcgtacct ... aatggcgaagACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
EST: gi|208378562|gb|DC903593.1|DC903593
EST:     AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAG                         ACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
genomic: AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAGgtgcgtacct ... aatggcgaagACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
EST: gi|100390180|gb|BY952588.1|BY952588
EST:     AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAG                         ACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
genomic: AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAGgtgcgtacct ... aatggcgaagACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
EST: gi|100444895|gb|BY982723.1|BY982723
EST:     AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAG                         ACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT
genomic: AACGGATTTCATACGTCGGGCACTCTCCTCCCCCCGTCTCTGTATCTCAGgtgcgtacct ... aatggcgaagACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttctgcatcctgactctcttctcgaactgcgtcgatggaaccgcaatggcgaagACGATAGACATCCAGGGAGGCTACATAATACCAGGGCTGTGCGATGCTCATGTCCATGTGACCGCGGTGTCAGCCAACCTGCATGACTTGCTCGTACTGC
        tcctgac  putative branch site (score: 2)