1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gggtgattgtgacgagcaaacgccgggtcggctttgcgctgggggatgcgcgatggagttgtgattgcactaattggtatggtgcacgtgtgttttgcagACCTGCCCTCTGCTGCTGCGAGTCTTTACGAAG
species | Physcomitrella patens |
transcript | PP1S69_145V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGGACAACCTGGCCCGCCTCGCAATATTCCGGTGGTGGACCGAGAGAAG ACCTGCCCTCTGCTGCTGCGAGTCTTTACGAAGEST: gi|162275608|gb|FC451324.1|FC451324
genomic: GAGGACAACCTGGCCCGCCTCGCAATATTCCGGTGGTGGACCGAGAGAAGgtgagatttt ... tgttttgcagACCTGCCCTCTGCTGCTGCGAGTCTTTACGAAG
EST: GTGGACCGAGAGAAG ACCTGCCCTCTGCTGCTGCGAGTCTTTACGAAGEST: gi|18372613|gb|BJ204215.1|BJ204215
genomic: GTGGACCGAGAGAAGgtgagatttt ... tgttttgcagACCTGCCCTCTGCTGCTGCGAGTCTTTACGAAG
EST: GAGGACAACATGGCCCGCCTCGCAATATTCCGGTGGTGGACCGAGAGAAG ACCTGCCCTCTGCTGCTGCGAGTCTTTACGAAG
genomic: GAGGACAACCTGGCCCGCCTCGCAATATTCCGGTGGTGGACCGAGAGAAGgtgagatttt ... tgttttgcagACCTGCCCTCTGCTGCTGCGAGTCTTTACGAAG
atgcgcgatggagttgtgattgcactaattggtatggtgcacgtgtgttttgcagACCTGCCCTCTGCTGCTGCGAGTCTTTACGAAG
cactaat putative branch site (score: 10)
actaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gggtgattgtgacgagcaaacgccgggtcggctttgcgctgggggatgcgcgatggagttgtgattgcactaattggtatggtgcacgtgtgttttgcagACCTGCCCTCTGCTGCTGCGAGTCTTTACGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgca