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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtggctatcggaggatctaattgaatcccccccctgtcgttatgtagtggagcattgcggtttcgacaggtgtgatgtagctcgttgttacggaatctggtgtcccaattggtccccatgtaggagaccgtgtgctgagatgtgcgagtggtttttagGATTATGTTCTGCAATCCTTCGTCTGTCCAAATGCCAAGGCAATTCTGGAGCCAAAGATTTGCTCTACCTCAAGCCCGTGCAAACAGGATTCCCGTCTGA

Basic information

species Physcomitrella patens
transcript PP1S68_291V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18374113|gb|BJ205691.1|BJ205691
EST:     CATGGTGTGGGGGAGCAATACGGGAGTGGGCAAAACGCTCGTTAGTGCAG                         GATTATGTTCTGCAATCCTTCGT
genomic: CATGGTGTGGGGGAGCAATACGGGAGTGGGCAAAACGCTCGTTAGTGCAGgttagtggct ... tggtttttagGATTATGTTCTGCAATCCTTCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccaattggtccccatgtaggagaccgtgtgctgagatgtgcgagtggtttttagGATTATGTTCTGCAATCCTTCGTCTGTCCAAATGCCAAGGCAATTCTGGAGCCAAAGATTTGCTCTACCTCAAGCCCGTGCAAACAGGATTCCCGTCTGA
                                                ttttt  CT-rich tract
                                                ttttta  TA-rich tract